Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq292 158 3e-33
seq15 149 2e-30
>seq292
Length=796020
Score = 158 bits (174), Expect = 3e-33
Identities = 161/208 (77%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| |||||||||||||||||||| || || || || ||||| ||||||| ||| || |
Sbjct 171242 CAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGG--AGCCCAGTG 171299
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| |||||||| || |||||||||||| |||||||| || ||||| |||||||
Sbjct 171300 ACACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGC 171359
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || |||||||| |||||||| | || || | || || |||
Sbjct 171360 AGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACA 171419
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || || || ||
Sbjct 171420 TCCAGAAGGAGTCCACCCTCCACCTGGT 171447
Score = 158 bits (174), Expect = 3e-33
Identities = 161/208 (77%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| |||||||||||||| ||||| || || || |||||||| ||||||| ||| || |
Sbjct 171470 CAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGG--AGCCCAGTG 171527
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| ||||| |||||||| || |||||||||||| |||||||| || ||||| |||||||
Sbjct 171528 ATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGC 171587
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| |||| ||||| || || |||||||| |||||||| | || || | || || |||
Sbjct 171588 AGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACA 171647
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || || || ||
Sbjct 171648 TCCAGAAGGAGTCCACCCTCCACCTGGT 171675
>seq15
Length=4650977
Score = 149 bits (164), Expect = 2e-30
Identities = 159/208 (76%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || || || ||||| || ||||| |||||||| |||||||| || |||
Sbjct 564798 CAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGA--GCCCAGCG 564741
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| |||||||||||| || || ||||| || || || ||||| || |||||||
Sbjct 564740 ACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 564681
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| |||||||| ||||| |||||||| | || || | || || ||
Sbjct 564680 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAATA 564621
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
||||||||||||| || || || |||||
Sbjct 564620 TCCAAAAAGAATCCACCCTCCACCTTGT 564593
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| || |||||| | |||
Sbjct 564342 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGCGAC 564283
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||||||||| || || ||||| || || || ||||| || ||||||||
Sbjct 564282 ACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 564223
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || ||||| ||||| || ||||| || ||||| | || || |||| || ||| ||
Sbjct 564222 AGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATC 564163
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| |||||||| || || || ||||||
Sbjct 564162 CAGAAAGAATCTACCCTCCACCTTGTT 564136
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| || || ||||| || || || |||||||| ||||| || || |||
Sbjct 564570 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 564513
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||||||||| ||||| ||||| || || || ||||| || |||||||
Sbjct 564512 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 564453
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| |||||||| ||||| |||||||| | || || | || || |||
Sbjct 564452 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 564393
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || || || ||
Sbjct 564392 TCCAGAAGGAGTCCACCCTTCACCTGGT 564365
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||| || || ||||| || ||||| |||||||| |||| ||| || |||
Sbjct 569608 CAGATCTTCGGCAAGACCCTCACCGGCAAAACCATCACCCTTGAGGGGGA--GCCCAGTG 569551
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||||||||| || || ||||| || || || ||||| || |||||||
Sbjct 569550 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 569491
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | || || | || || |||
Sbjct 569490 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 569431
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| |||||||| ||||| || || ||
Sbjct 569430 TCCAGAAAGAATCCACACTCCACCTGGT 569403
Score = 107 bits (118), Expect = 5e-18
Identities = 119/157 (76%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| || || ||||| || || || |||||||| || || || || |||
Sbjct 569380 CAGATCTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTGGAAGTTGA--GCCCAGTG 569323
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| |||||||||||| || || ||||| || || || ||||| || |||||||
Sbjct 569322 ACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 569263
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
| | || ||||| || || || ||||| ||||||||
Sbjct 569262 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGG 569226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203669740118090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |