Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq292 158 3e-33 seq15 149 2e-30 >seq292 Length=796020 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || |||||||||||||||||||| || || || || ||||| ||||||| ||| || | Sbjct 171242 CAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGG--AGCCCAGTG 171299 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || |||||||||||| |||||||| || ||||| ||||||| Sbjct 171300 ACACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGC 171359 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 171360 AGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACA 171419 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 171420 TCCAGAAGGAGTCCACCCTCCACCTGGT 171447 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || |||||||||||||| ||||| || || || |||||||| ||||||| ||| || | Sbjct 171470 CAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGG--AGCCCAGTG 171527 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || |||||||||||| |||||||| || ||||| ||||||| Sbjct 171528 ATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGC 171587 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 171588 AGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACA 171647 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 171648 TCCAGAAGGAGTCCACCCTCCACCTGGT 171675 >seq15 Length=4650977 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || ||||| |||||||| |||||||| || ||| Sbjct 564798 CAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGA--GCCCAGCG 564741 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| || || ||||| || || || ||||| || ||||||| Sbjct 564740 ACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 564681 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| |||||||| | || || | || || || Sbjct 564680 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAATA 564621 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||||| || || || ||||| Sbjct 564620 TCCAAAAAGAATCCACCCTCCACCTTGT 564593 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| || |||||| | ||| Sbjct 564342 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGCGAC 564283 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || || ||||| || || || ||||| || |||||||| Sbjct 564282 ACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 564223 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| || ||||| | || || |||| || ||| || Sbjct 564222 AGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATC 564163 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| || || || |||||| Sbjct 564162 CAGAAAGAATCTACCCTCCACCTTGTT 564136 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || || |||||||| ||||| || || ||| Sbjct 564570 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 564513 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || || || ||||| || ||||||| Sbjct 564512 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 564453 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| |||||||| | || || | || || ||| Sbjct 564452 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 564393 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 564392 TCCAGAAGGAGTCCACCCTTCACCTGGT 564365 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||| || || ||||| || ||||| |||||||| |||| ||| || ||| Sbjct 569608 CAGATCTTCGGCAAGACCCTCACCGGCAAAACCATCACCCTTGAGGGGGA--GCCCAGTG 569551 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || ||||| || || || ||||| || ||||||| Sbjct 569550 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 569491 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 569490 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 569431 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| ||||| || || || Sbjct 569430 TCCAGAAAGAATCCACACTCCACCTGGT 569403 Score = 107 bits (118), Expect = 5e-18 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || || |||||||| || || || || ||| Sbjct 569380 CAGATCTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTGGAAGTTGA--GCCCAGTG 569323 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| || || ||||| || || || ||||| || ||||||| Sbjct 569322 ACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 569263 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | | || ||||| || || || ||||| |||||||| Sbjct 569262 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGG 569226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203669740118090