Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq15 123 2e-23 seq292 120 3e-22 >seq15 Length=4650977 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| || || || || || ||||| || |||||||| Sbjct 564584 AGACGGAGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGG 564643 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || ||||| | ||| ||||| | ||| | || |||| Sbjct 564644 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 564703 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| |||||| |||| ||| || | ||||||| | ||||||||||| || Sbjct 564704 TTATCCTGGATTTTG-GCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGT 564762 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| || || || ||||| || || ||||||||||| Sbjct 564763 GATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 564804 Score = 122 bits (134), Expect = 8e-23 Identities = 146/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| |||||||| |||||||| | || || |||||||||||||| || Sbjct 564155 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 564214 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||| ||||| | ||| | || |||||| ||| |||||| ||| ||| Sbjct 564215 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTT----GAC 564270 Query 41792 G-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | || |||||||| | ||||| |||| || || || || || || || ||||| Sbjct 564271 GTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTT 564330 Query 41848 TACGAAAATCTGCATG 41863 ||||| ||||||||| Sbjct 564331 GACGAAGATCTGCATG 564346 Score = 116 bits (128), Expect = 3e-21 Identities = 161/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| || ||||| ||||| ||||| || |||||||| Sbjct 569394 AGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 569453 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||| | || |||| Sbjct 569454 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 569513 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| |||||| ||| |||| | || ||||| || | |||| |||| | Sbjct 569514 TTATCCTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAG 569569 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| || || || ||||| |||| ||||||||| Sbjct 569570 GGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCATG 569612 Score = 104 bits (114), Expect = 2e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 41681 ATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740 ||||| ||||| || |||||||| | || || ||||||||||| || || ||||| | | Sbjct 569202 ATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 569261 Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGT 41799 || ||||| | ||| | || |||||| ||| || |||| |||| ||| | | || Sbjct 569262 TGCTGGTCAGGGGGGATGCCCTCCTTATCC-TGGATTTTGGCTTTGACGTTCTCAATGGT 569320 Query 41800 GTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859 ||| || | ||| || |||| || || || || || || || ||||| ||||| ||||| Sbjct 569321 GTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 569380 Query 41860 CATG 41863 |||| Sbjct 569381 CATG 569384 >seq292 Length=796020 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| ||||||||| ||||| ||||| || |||||||| Sbjct 171684 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 171625 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || ||||| | ||| ||||| | |||| || || Sbjct 171624 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCT 171565 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | ||||| | ||| || | | || || | ||||||||||| || Sbjct 171564 TTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGT 171506 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || || || ||||||||||||||| Sbjct 171505 GATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATG 171466 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| ||||||||| ||||| ||||| || |||||||| Sbjct 171456 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 171397 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || || || || || || | ||| ||||| | |||| || || Sbjct 171396 CCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 171337 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | ||||| | ||| || | |||| || | ||||||||||| || Sbjct 171336 TTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGT 171278 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || || |||||||||||||| || Sbjct 171277 AATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 171236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462280971482000