Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq86 416 3e-111 seq577 107 2e-18 >seq86 Length=659436 Score = 416 bits (460), Expect = 3e-111 Identities = 1287/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Minus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115 |||||| ||||| | | | || | | | ||||| ||||| || ||||| | | Sbjct 245827 CTGAATGGATCCGTTGTTTGCAATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 245768 Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175 ||| || | | | ||||| || || || || | || || ||||| |||| || || Sbjct 245767 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 245708 Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 245707 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 245648 Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 53295 || || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 245647 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 245588 Query 53296 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 53355 || || || || | | ||| | ||| || || | ||| | | Sbjct 245587 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 245530 Query 53356 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 53413 | || || || || |||||| || ||| || | ||||| ||||| || || || Sbjct 245529 TACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCT 245470 Query 53414 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 53473 | || ||||| || || ||||| | || ||| || ||||| |||||||||| | Sbjct 245469 GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 245410 Query 53474 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 53533 || || || ||||| |||| || || |||| | || || || || || || Sbjct 245409 TTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCC 245350 Query 53534 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 53593 | || || || || || ||||| || || || | ||| || || | || ||||| || Sbjct 245349 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGG 245290 Query 53594 ATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACA 53653 | || || || || || || || || || ||||||||| | || ||||| ||| || Sbjct 245289 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 245230 Query 53654 TCCTTCAGTTTGAGAAAATCAAATTGTCCA-TCTA---TTACAAACATGTTCAATGCAAT 53709 ||| || || || || |||| ||| | || ||||||| | || || Sbjct 245229 GAGGCCAGCTTCTTGAAGTCGAAA-GTCCGCTCTGGCGTGACGTACATGTTGAGGGCGAT 245171 Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTG 53767 || ||||| || || ||||| ||||| | | | | | || | | | ||| ||| Sbjct 245170 GGAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCTGTG 245113 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || || || || || |||||||| || | || || || || ||||| |||| || || Sbjct 245112 CAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCG 245053 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 ||||| || || ||| | ||||| || ||||| ||||||| || || || || | |||| Sbjct 245052 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAG 244993 Query 53888 ACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACA 53945 | | ||||| | | || ||| ||| | || ||| ||||| | Sbjct 244992 AGCTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGC 244933 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 || || ||||| |||||||| | ||||| || ||||| || |||||||||| Sbjct 244932 TTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCA 244875 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 54064 | ||||| || || || ||||| ||||| || || || || ||||| | || | Sbjct 244874 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGT 244815 Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124 | ||| || ||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 244814 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 244756 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | | || | ||||||||||||| ||| |||| | | || || | ||||| Sbjct 244755 TCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG 244696 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | || Sbjct 244695 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 244636 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||| || ||||| || | ||| |||||||| | | || || || | | Sbjct 244635 TTGGAGTTGCCGTTGGTGCCAGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 244576 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || ||||| || || || || || | ||||| | || | || || |||||| Sbjct 244575 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 244516 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || || || || || ||| ||||| | || || || ||||| |||| || | || | Sbjct 244515 CCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 244456 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 244455 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 244396 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||||||| || | ||| || || | || || || || | || | ||| | | Sbjct 244395 TAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 244336 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 |||||||| || | || | | || ||| || ||||||| |||||| |||| | Sbjct 244335 ATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGA 244276 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGT 54664 || || ||||| || ||||||| || || |||| || ||||| || || || || Sbjct 244275 GTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGAGGAATTAAGG 244216 Query 54665 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTT 54723 ||||| | || | || | || | || | ||| || || || ||||| || Sbjct 244215 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTG--- 244160 Query 54724 CCCATTTTT---AGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttt 54780 || || || ||| ||||| ||| || | || | |||||| || || || | || Sbjct 244159 CCGTTTGTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTT 244100 Query 54781 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 54840 || || || ||||| || || || ||||| || || ||||| || ||||| || || || Sbjct 244099 CTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 244040 Query 54841 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGT 54900 |||| || || ||||| || || || || | || ||||| | || || || || Sbjct 244039 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGGT 243980 Query 54901 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 54960 || || | || | || ||||| |||||||| | || | | ||||| | | || Sbjct 243979 GACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTC 243920 Query 54961 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 55017 | ||| | ||| || || || |||| || || || ||||||||||| |||||||| Sbjct 243919 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 243863 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || ||||| || |||| || || || ||||| | Sbjct 246090 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 246031 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 246030 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 245971 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 245970 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 245922 >seq577 Length=410616 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||||||||||| ||||| || || |||||| || | || || || || || || | Sbjct 149108 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 149167 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| ||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 149168 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 149227 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | |||||||||| |||||||| | |||| | ||||||||| Sbjct 149228 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 149276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593588101698240