Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq722 127 2e-24 seq2100 111 1e-19 >seq722 Length=280156 Score = 127 bits (140), Expect = 2e-24 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||||| || | ||||||||||| || || || ||||||| || Sbjct 192177 CCCCTC--AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGACA 192120 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || ||||||||||| || ||| | || || ||||||||||| || | Sbjct 192119 GGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAA 192060 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | | | ||||||| ||||||| | Sbjct 192059 TGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCT 192000 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||| ||| |||||||| || || | ||||| || || || ||||| || Sbjct 191999 CCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 191951 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || | ||| | |||||||| || | ||||||||||| || ||||| ||||||| Sbjct 192409 TCCTCCCCTCAGGCAGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGA 192350 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || | || ||||||||||| || ||| | || || ||||||||||| || Sbjct 192349 CAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGG 192290 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | | |||| || || |||||| ||||| | | | ||||||| ||||||| Sbjct 192289 AATGTCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 192230 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| || || | ||||| || || || ||||| Sbjct 192229 CTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 192182 >seq2100 Length=111253 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||| || || || ||||| ||||| | |||||| || | || Sbjct 27592 GAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 27651 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| || || ||| | || || ||||||||||| ||| | ||| ||||| || Sbjct 27652 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 27711 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | | || |||| ||||||| || | ||| ||||| Sbjct 27712 CTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGT 27771 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTC--TTATAAAT 21193 |||||||| | ||||| ||||| || ||||| ||| | | | |||||||| Sbjct 27772 TTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTGCACCACCTTTATAAAT 27824 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||||||||| || ||||| ||||| | |||||| || | || Sbjct 23402 GAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 23461 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| || || ||| | || || |||||||| || ||| | ||| ||||| || Sbjct 23462 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATC 23521 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | | || || | |||||| |||| ||| ||||| Sbjct 23522 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 23581 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | || ||||| || || ||||| Sbjct 23582 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 23614 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || ||||| || || ||||| | |||||| || | || |||||||| || || Sbjct 23646 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCA 23705 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || ||| || || Sbjct 23706 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 23765 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| |||| ||| ||||| |||||||| | || Sbjct 23766 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 23825 Query 21159 TTGACAAATATTTGCATTTT 21178 |||||||| || ||||| || Sbjct 23826 TTGACAAAGATCTGCATGTT 23845 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || ||||| ||||| ||||| | ||||| || | || |||||||| || || Sbjct 27380 GTAGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 27439 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || |||||| || Sbjct 27440 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 27499 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||| |||||||| | || Sbjct 27500 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 27559 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 27560 TTGACGAAGATCTGCAT 27576 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || || || ||||| ||||| | ||||| || | ||||||||||| ||||| Sbjct 23190 GTAGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 23249 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || ||| || || Sbjct 23250 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 23309 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||| ||| |||| ||| ||||| ||||| || | || Sbjct 23310 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTC 23369 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 23370 TTGACGAAGATCTGCAT 23386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422166628643408