Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq345 273 2e-68 seq461 102 6e-17 >seq345 Length=387903 Score = 273 bits (302), Expect = 2e-68 Identities = 595/875 (68%), Gaps = 18/875 (2%) Strand=Plus/Minus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| | || |||||| | || || ||||| ||||| |||||| |||| |||||||| || Sbjct 261309 AGTGAGGAGGAGCTAAATTTTCCTATTGCATACTCCATGGTGATCCACGAGAAGATAGAG 261250 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | |||||||| || || ||| | | ||||| || |||||||| ||||| ||||| | Sbjct 261249 ATGTTTGAACGACTCCTACGATCTATTTATGCTCCGCAGAACATCTACTGCGTCCATATT 261190 Query 107814 GATGTGAAGTCCCCAGAGACTTT-CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 || |||||| | | |||| || || ||| || || | | |||||||||| || Sbjct 261189 GACCAGAAGTCTTCCCCGTCTTTTCACAG-GGCTGTGAAAGAAGTAGTTTCCTGCTTTCC 261131 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 |||||| || | |||||||| || | || || ||||| || |||||||||||||| Sbjct 261130 CAATGTTTTTGTAGCCAGTAAATTAGAAAGTGTCGTGTATGCTTCATGGTCCAGAGTGCA 261071 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTT 107989 || || |||||||| ||| |||| |||| || ||| ||| | ||||| ||| | Sbjct 261070 GGCAGATCTGAACTGCATGAAAGATCTGCTGCA---CTCTGAAGTTCGGTGGAAATACCT 261014 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||||||| || ||||||||||| ||||| || |||||| |||||||| |||| || Sbjct 261013 TTTGAATACCTGTGGGACAGACTTTCCCATCAAAACCAATAGGGAGATGGTGATGGCTCT 260954 Query 108050 CAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa 108109 || | | || || | |||||| ||||| |||| || | || ||||| ||| Sbjct 260953 GAAAGTCCTCAATGGGAGGAACAGCATGGAAACTGAAGTCACCAGTGTCTCCAAGAAAGG 260894 Query 108110 TCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAG-CAAGATGAAGG 108168 ||||||| | |||| | | | || || || | | | | ||| | || ||| Sbjct 260893 TCGCTGGCAGTACCACCACAATGTCACCAAC-GGCGTCATCAGAACAGACGTGA-GAAAA 260836 Query 108169 ACCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGA 108227 | || || | || | | ||| |||||| |||| || ||||| ||||||| |||| | Sbjct 260835 AGCCCGCCGCCCATCAGTAGCCCAATGTTCTCAGGAAACGCCTACTTTGTGGTCTCTAGG 260776 Query 108228 GCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAA 108287 |||||||| || | || | | ||| | || | | | | ||||||| ||| Sbjct 260775 GCCTTTGTGAAATACGTGATGCAGAACAGAGAGGTTCAGAAATTCATGGAATGGGAAAAA 260716 Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGC 108345 ||||| || || || ||||||||| | ||||||||||| ||| | || ||| | | | | Sbjct 260715 GACACATACAGTCCAGACGAACACATGTGGGCCACCCTGCAGAGGATG-TCC-TCGGTTC 260658 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 |||| || || || || ||| ||| ||| ||||||||| || ||||| | Sbjct 260657 CTGGATCAGTGCCCCCAAACGGCAAATATGACACGTCAGACATGCTGGCTCTCGCCCGAG 260598 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 ||||||||||| || ||||| || | | || || || || || || Sbjct 260597 TCGTCAAGTGGTCTTATTTAACAGGAGACGTGAAAAAAGGAGCTCCGTACTATCCGTGTA 260538 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 | || | | | |||| ||| | || | || || ||||| ||||| ||| | || Sbjct 260537 CGGGGACCTACAGGAGAGCCGTGTGTGTGTATGGCGCCGGCGACCTCCTGTGGCTCCT-G 260479 Query 108526 AGA-ACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 ||| | || |||||||| ||||| ||||||||||| Sbjct 260478 AGACAGCAGCACCTCTTTGCAAATAAGTTTGACCC 260444 >seq461 Length=347704 Score = 102 bits (112), Expect = 6e-17 Identities = 191/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| ||||| |||||| | || || ||||||||||| || ||| | || ||| Sbjct 245600 AACTTTGAACGACTGCTACGAGCCATCTACGCACCTCAGAACATTTATTGTATTCATGTG 245659 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || |||| || | |||| || | | ||| | ||||| |||||| Sbjct 245660 GACAAAAAATCCCAGCCCTCTGTAAAAGCTGCCATTACCAGCATCGTGTCCTGTTTCCCC 245719 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||||||||||| | | || || |||||||| || ||| | | || ||| Sbjct 245720 AATGTCTTCATGGTCGGACAGGCTGTGAGTGTGGTTTACGCTGGGTGGCCTCGTGTCCAA 245779 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGC--CATGGAAGTACTTA 107990 |||||||| ||||| |||| ||| ||| | || | |||||| ||||| ||||| Sbjct 245780 GCTGACCTCAACTGCATGGCTGAC---CTCTATGAACGCAGTGCAGAGTGGAAATACTTC 245836 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || ||||| ||||||||| |||| ||||| Sbjct 245837 ATCAACCTCTGCGGACAAGACTTCCCTCTAAAAACCAA 245874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348192449466312