Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq86 156 9e-33 >seq86 Length=659436 Score = 156 bits (172), Expect = 9e-33 Identities = 639/1005 (64%), Gaps = 42/1005 (4%) Strand=Plus/Plus Query 248437 GACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGT 248496 || |||||| | || ||| | ||||| |||||| | | |||||| ||||||| || Sbjct 243845 GATGGGCGCCAGGAGCGCGTCATGTTCGATAAAATCACCTCCCGCATCCAGAAGCTTTGC 243904 Query 248497 TATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGC 248556 || || ||| | || |||| || |||| | ||| || ||| || || |||| Sbjct 243905 TACGGCCTGAACCCGGACTTTGTGGATCCGGCTCAGATCACCATGAAGGTGATCCAGGGC 243964 Query 248557 GTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTAC 248616 | |||| ||| || || || || || ||||| |||| ||||||| ||||| | Sbjct 243965 TTGTACAGCGGCGTCACCACCGTGGAGCTAGACACGCTAGCGGCGGAGATCGCGGCCACC 244024 Query 248617 ATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTT 248676 || ||| ||||||||||||| | | ||||||| |||||| |||||||| | || Sbjct 244025 CTGACGACCAAACACCCCGACTACGCCATCCTGGCCGCGAGGATTGCCGTCTCCAACCTG 244084 Query 248677 CACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGACCTACATGCCTATG----- 248731 ||||| || || || || |||| ||| |||| ||||| ||||| | Sbjct 244085 CACAAGGAGACCAAGAAGGTGTTCAGCGAGGTGATGGAAGACCTGTTCGCCTACGTCAAC 244144 Query 248732 -------------GG---------ATGGTCGCC--GATGACG-TCCACACCGTCATTCAG 248766 || ||| || || | |||| || ||| |||||| | Sbjct 244145 CCTCTGAACAAACGGCACTCTCCCATGATCTCCAAGGAGACGCTCGACATCGTCAT---G 244201 Query 248767 GACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTC 248826 || ||| | ||| ||| | | | || || | || |||||| ||| | ||| Sbjct 244202 GAAAACAAGGACCGCCTTAATTCCTCCATCATTTATGACAGAGATTTCTCCTACAACTTC 244261 Query 248827 TTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAA 248886 || | |||||| || |||||| || || || || || || | || || | | || Sbjct 244262 TTCGGTTTCAAGACTCTGGAGCGCTCCTACCTGCTGAAGATCAACGGGAAAGTGGCCGAG 244321 Query 248887 CGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGC 248946 || ||||||||| | ||| | ||| | || ||||| ||| | ||||| || || Sbjct 244322 CGGCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGA-CGC 244380 Query 248947 GTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGC 249004 ||| ||||||| |||| | || || ||| | || || ||| | ||||| | Sbjct 244381 -TGCCATCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCC 244439 Query 249005 TCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAG 249064 ||||||||||||| ||| | |||||| | ||||| || || ||||| | | Sbjct 244440 TCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTCACCATGAAGG 244499 Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCG 249124 ||||| |||| ||||| || ||||| || || ||| ||| ||||| || | || Sbjct 244500 ACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCG 244559 Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184 | ||||| ||||| | | || | ||||||| ||| ||| |||||| || | Sbjct 244560 CTGGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGAAGCTACATCGCTGGCA 244619 Query 249185 CAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGT 249244 | || || | | || | || || | || || | | ||| || | | Sbjct 244620 CCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGCT 244679 Query 249245 TCATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGGAAGTGTGG 249300 | || |||||| | ||| | | || ||| | ||||||||||| ||||| |||| Sbjct 244680 ACGTCGACCAGGGC-GGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGAACCGTGG 244738 Query 249301 CACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGA 249360 ||| ||| | || || |||||||| |||| ||||||| || || ||| |||| Sbjct 244739 CACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGA 244798 Query 249361 GCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || | ||||| ||||||| | ||||| || | ||| |||||||| Sbjct 244799 GCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATG 244843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073518927715584