Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq86 461 7e-125 seq577 122 8e-23 seq2100 98.7 9e-16 >seq86 Length=659436 Score = 461 bits (510), Expect = 7e-125 Identities = 1030/1539 (67%), Gaps = 29/1539 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||||| ||| | |||| || |||| || ||| |||| || | || ||| Sbjct 245784 TCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAAC 245725 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||||| || | ||| ||| |||||| ||| ||| |||| || || ||| Sbjct 245724 TCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTG 245665 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || ||||| ||||||| ||| || ||| ||| Sbjct 245664 TTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTC 245605 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| || | || || ||| |||| | |||||||||||| |||| ||||||| Sbjct 245604 ACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTC 245545 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGC-TGCCTTCGTACGT 22707 || |||||||| ||||| || | | ||| ||| | ||||| ||| ||||| || Sbjct 245544 ---TTCTCCCACATGTCGTACTGGAGGATGCCCTTACT-GACGGGCGAGCCCTCGTATGT 245489 Query 22708 TTCGTACGGACC-ATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATA 22766 ||||| || || | | | ||||| ||||||||||| ||||||| ||| ||| || | Sbjct 245488 CTCGTAGGGGCCGAGCTCT-GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGA 245430 Query 22767 TAGTCTCGAAGATTTTCTTGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACG 22824 | ||||||||||| | |||| | | || ||| || ||||||| |||| || Sbjct 245429 TGGTCTCGAAGATCTGGATGTTGA--GCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCG 245372 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||||| | ||| || || |||| |||||| ||||| || |||||||| | || | Sbjct 245371 CATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTT 245312 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 || ||| | || ||||| | || || | || ||||| | |||| | ||| Sbjct 245311 GTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTT 245252 Query 22945 TCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001 | |||| ||| || || | | |||||| || | | | | Sbjct 245251 T---TTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGG 245195 Query 23002 TACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061 || || |||||| |||||| ||||| || ||||| |||||||||||||| ||| Sbjct 245194 CGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT 245135 Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121 |||||||| || | || || || || ||||| || || || ||||||| || ||| Sbjct 245134 GGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 245075 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 |||||| || | ||||| | ||||||||||||||||| ||||| || || ||| ||| Sbjct 245074 GTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTG 245015 Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCT 23239 ||||||||||| || ||| | ||| || | ||| | | | | ||| ||| Sbjct 245014 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT--TCACCACCCTCTTCACCCTCCCT 244957 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || | ||| || | ||| | | || || || | || | || ||| |||| ||| Sbjct 244956 TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCG 244897 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | |||||||| | ||| || | || || | |||| || Sbjct 244896 GGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAAC 244837 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || ||||| ||||| | |||||||| || || | ||| | | |||||| || || ||| Sbjct 244836 AGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG 244777 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| |||| |||| ||||| |||||||| |||||||| || ||||| | ||| Sbjct 244776 TTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCG 244717 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || |||||||| ||||||||||| |||||||| || |||||||||||||| ||| Sbjct 244716 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACT 244657 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT-- 23597 || |||||||| || | |||||||| |||| ||| || | | | ||| Sbjct 244656 CTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCAGCGA----TGTAGCTTCC 244601 Query 23598 --TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 | | ||| | | | || | || || || || | || || || || | ||| Sbjct 244600 CGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGC 244541 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 ||| || ||||| |||||||||||||| ||||||||||| || || | | || || ||| Sbjct 244540 GCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAA 244481 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 || |||| |||| | || |||| ||| || ||||| |||||| || Sbjct 244480 GCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 244421 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 || | | ||||| || ||||| || |||||||| || || ||||| ||||| Sbjct 244420 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTG 244361 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 || || | | || | ||| | ||||| || || | |||| || ||||| || Sbjct 244360 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGAT 244301 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 || | ||| || || || | || || || || || || Sbjct 244300 CTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAA 244262 >seq577 Length=410616 Score = 122 bits (134), Expect = 8e-23 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||| || || || || || || |||||||| |||| || || Sbjct 151926 CACCTCATCTTTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGT 151985 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||| | || | ||||| | ||||||||||||||||||||||| Sbjct 151986 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 152045 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||||||||||||||| || Sbjct 152046 ACCCGTCTCTGTCTGCGACTCGATGATGGC 152075 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | || ||||||| || | ||| | Sbjct 152394 TTTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTC 152453 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| |||| |||||||| || |||||||| ||||||| Sbjct 152454 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCC 152513 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || | || || || ||||||| Sbjct 152514 ACGGCTCCAGGTACACAGAGAAGGCCCCTGGTCTCT 152549 >seq2100 Length=111253 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || |||||||| |||||| | || || || | Sbjct 23847 CAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGC 23788 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | ||||| | ||| ||| ||||| ||| | || || | Sbjct 23787 CCAGCGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTG 23728 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || ||||| || ||| ||||||| || || || | Sbjct 23727 ACCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 23668 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || ||||||||||| || || || || || || | |||||||| || Sbjct 23667 ACAATATCCAAAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGG 23616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || |||||||| |||||| | || ||||| || Sbjct 27577 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTTGAGCCCAG 27518 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||| ||||| ||| | || || ||||| Sbjct 27517 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 27458 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || ||| ||||||| || | || || || Sbjct 27457 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 27398 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||||||||| || || || || || || | |||||||| || Sbjct 27397 CATCCAAAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGG 27350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445666169424960