Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq86 416 4e-111 seq577 107 3e-18 >seq86 Length=659436 Score = 416 bits (460), Expect = 4e-111 Identities = 1287/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 |||||||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 245827 CTGAATGGATCCGTTGTTTGCAATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 245768 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | | | ||||| || || || || | || || ||||| |||| || || Sbjct 245767 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 245708 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 245707 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 245648 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 245647 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 245588 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | ||| || || | ||| | | Sbjct 245587 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 245530 Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 | || || || || |||||| || ||| || | ||||| ||||| || || || Sbjct 245529 TACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCT 245470 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 | || ||||| || || ||||| | || ||| || ||||| |||||||||| | Sbjct 245469 GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 245410 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || ||||| |||| || || |||| | || || || || || || Sbjct 245409 TTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCC 245350 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 | || || || || || ||||| || || || | ||| || || | || ||||| || Sbjct 245349 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGG 245290 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 245289 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 245230 Query 65685 TCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACA 65741 ||| || || || || ||||| | || ||||||| | || | Sbjct 245229 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 245170 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 65799 || ||||| || || ||||| ||||| | | | | | || | | | ||| |||| Sbjct 245169 GAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCTGTGC 245112 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | || || || || |||||||| || | || || || || ||||| |||| || || | Sbjct 245111 AGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 245052 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 245051 CCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 244992 Query 65920 -CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACA 65976 | || | ||||| | | || ||| ||| | || ||| ||||| | Sbjct 244991 GCTGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGC 244933 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 || |||||||| |||||||| | ||||| || ||||| || |||||||||| Sbjct 244932 TTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCA 244875 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 66095 | ||||| || || || ||||| ||||| || || || || ||||| | || | Sbjct 244874 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGT 244815 Query 66096 ATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 66155 | ||| | ||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 244814 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 244756 Query 66156 GCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 66215 | | | || | ||||||||||||| ||| ||||| | | || || | ||||| Sbjct 244755 TCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG 244696 Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | || Sbjct 244695 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 244636 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||| | || ||||| || | ||| |||||||| | | || || || | | Sbjct 244635 TTGGAGTTGCCGTTGGTGCCAGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 244576 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | || || || || || || || || | ||||| | || | || || |||||| Sbjct 244575 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 244516 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 || || || || || ||| ||||| | || || || ||||| |||| || | || | Sbjct 244515 CCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 244456 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 244455 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 244396 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || ||||| || || | ||| || || | || || || || | || | ||| | | Sbjct 244395 TAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 244336 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 |||||||| || | || | | || ||| || |||| || |||||| |||| | Sbjct 244335 ATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGA 244276 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 || || ||||| || ||||||| || || |||| || ||||| || || || || Sbjct 244275 GTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGAGGAATTAAGG 244216 Query 66696 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTT 66754 ||||| | || | || | || | || | ||| || || || ||||| || Sbjct 244215 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTG--- 244160 Query 66755 CCCATTTTT---AGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 66811 || || || ||| ||||| ||| ||| | || |||||||| || || || | || Sbjct 244159 CCGTTTGTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTT 244100 Query 66812 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGG 66871 || || || ||||| || || || ||||| || || ||||| | ||||| || || || Sbjct 244099 CTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 244040 Query 66872 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 66931 |||| || || ||||| || || || || || || ||||| | || || || || Sbjct 244039 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGGT 243980 Query 66932 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 66991 || || | || | || ||||| |||||||| | || | | ||||| | | || Sbjct 243979 GACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTC 243920 Query 66992 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 67048 | ||| | ||| || || || |||| || || || ||||||||||| |||||||| Sbjct 243919 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 243863 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || ||||| || |||| || || || ||||| | Sbjct 246090 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 246031 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 246030 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 245971 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 245970 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 245922 >seq577 Length=410616 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 ||||||||||||| ||||| || || |||||| || | || || || || || || | Sbjct 149108 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 149167 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| ||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 149168 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 149227 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | || | |||||||||| |||||||| | |||| | ||||||||| Sbjct 149228 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 149276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658024809845920