Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13]
17,988 sequences; 815,144,743 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq722 98.7 1e-15
seq2100 89.7 5e-13
>seq722
Length=280156
Score = 98.7 bits (108), Expect = 1e-15
Identities = 119/157 (76%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||||||||||||| |||| || | ||||| || ||||| |||||||||||
Sbjct 192108 TCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 192049
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCA 139727
|| ||| | |||| || | |||| || | || || ||||||||||||| | ||| |
Sbjct 192048 TC-CTGAATCTTTGCCTTCAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGA 191991
Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | ||||| ||||| || |||||
Sbjct 191990 TGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 191954
Score = 96.9 bits (106), Expect = 3e-15
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| ||||| ||||||||||||
Sbjct 192378 GTGGACTCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTACCA 192319
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| ||| ||||||| || ||| | |||| ||
Sbjct 192318 GCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATC-CTGAATCTTTGCCTT 192260
Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
| |||| || | || || ||||||||||||| | ||| | ||||| || || | |
Sbjct 192259 CAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTCCCAGTGAGGG 192201
Query 139746 TTTTTACGAATATTTGCAT 139764
|||| ||||| || |||||
Sbjct 192200 TTTTCACGAAAATCTGCAT 192182
>seq2100
Length=111253
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||||| || ||||| || || ||||| || || || |||| ||||| |||||
Sbjct 23411 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 23470
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| || ||| ||||||| | |||||||| || || ||||| || || || ||| ||
Sbjct 23471 CTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGGATCTT 23530
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| | | || | |||||| ||||||| ||||| | ||| | |||||||||||
Sbjct 23531 GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGT 23590
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| || || ||||| || |||||
Sbjct 23591 GAGGGTCTTGACGAAGATCTGCAT 23614
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608
||| | ||| | ||| | || || |||||||| || || || || || ||||
Sbjct 23627 ACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCC 23686
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||||| ||||| || |||||| ||||||| | ||||| || || || ||||| || ||
Sbjct 23687 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTT 23746
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
|| |||||| || | | || | |||||| ||||||||||||| | ||| |
Sbjct 23747 ATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 23806
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| |||||||| | || || || || || |||||
Sbjct 23807 GGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 23842
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || ||||| || ||||| || ||| || |||| ||||| ||||| || ||
Sbjct 27608 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 27667
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || || || ||||| || || || ||| || ||
Sbjct 27668 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 27727
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||||| ||| | || |||||||| | |||
Sbjct 27728 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTT 27787
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 27788 TTCACAAAGATCTGCAT 27804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495952460009600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |