Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq722 98.7 1e-15 seq2100 89.7 5e-13 >seq722 Length=280156 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||||||||||||| |||| || | ||||| || ||||| ||||||||||| Sbjct 192108 TCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 192049 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCA 139727 || ||| | |||| || | |||| || | || || ||||||||||||| | ||| | Sbjct 192048 TC-CTGAATCTTTGCCTTCAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGA 191991 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||| ||||| || ||||| Sbjct 191990 TGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 191954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| ||||| |||||||||||| Sbjct 192378 GTGGACTCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTACCA 192319 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| ||| ||||||| || ||| | |||| || Sbjct 192318 GCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATC-CTGAATCTTTGCCTT 192260 Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | |||| || | || || ||||||||||||| | ||| | ||||| || || | | Sbjct 192259 CAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTCCCAGTGAGGG 192201 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| ||||| || ||||| Sbjct 192200 TTTTCACGAAAATCTGCAT 192182 >seq2100 Length=111253 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || || || |||| ||||| ||||| Sbjct 23411 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 23470 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| ||||||| | |||||||| || || ||||| || || || ||| || Sbjct 23471 CTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGGATCTT 23530 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | |||||| ||||||| ||||| | ||| | ||||||||||| Sbjct 23531 GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGT 23590 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 23591 GAGGGTCTTGACGAAGATCTGCAT 23614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || || |||||||| || || || || || |||| Sbjct 23627 ACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCC 23686 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| ||||||| | ||||| || || || ||||| || || Sbjct 23687 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTT 23746 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || |||||| || | | || | |||||| ||||||||||||| | ||| | Sbjct 23747 ATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 23806 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||||||| | || || || || || ||||| Sbjct 23807 GGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 23842 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||| || ||||| || ||| || |||| ||||| ||||| || || Sbjct 27608 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 27667 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || || || ||| || || Sbjct 27668 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 27727 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||||| ||| | || |||||||| | ||| Sbjct 27728 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTT 27787 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 27788 TTCACAAAGATCTGCAT 27804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495952460009600