Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13]
17,988 sequences; 815,144,743 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq86 421 9e-113
seq577 120 4e-22
seq990 87.8 2e-12
>seq86
Length=659436
Score = 421 bits (466), Expect = 9e-113
Identities = 1291/1979 (65%), Gaps = 31/1979 (2%)
Strand=Plus/Minus
Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108
|||||||||||| | |||||| | | | || || ||||| || ||||| | |
Sbjct 245827 CTGAATGGATCCGTTGTTTGCAATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 245768
Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168
||| || | | | ||||| ||||| || || | || || ||||| |||| || ||
Sbjct 245767 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 245708
Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228
|| ||||| || || ||||| |||| || | ||||| || || |||| || || ||
Sbjct 245707 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 245648
Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288
|| || || || ||||| || |||| || || || || || | || ||| |||
Sbjct 245647 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 245588
Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347
|| || || || || |||| | | ||| || || | ||
Sbjct 245587 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCGT 245529
Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407
||||| ||||| || || || | ||||| ||||| || || | |
Sbjct 245528 ACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCTG 245469
Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467
|||| ||||| || || ||||| | || | | || ||||| ||||| |||| | |
Sbjct 245468 CGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 245409
Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527
|||| || ||||| ||||| || || |||| | || || || || || || |
Sbjct 245408 TGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCA 245349
Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587
|| || ||||| || ||||| || ||||| | ||| || || | || ||||| || |
Sbjct 245348 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGA 245289
Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647
|| || || || || || || || || ||||| ||| | || ||||| ||| ||
Sbjct 245288 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 245229
Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704
|| || || || || ||| ||| | || ||| ||| | ||| | |
Sbjct 245228 AGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGG 245169
Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762
| ||||| || || ||||| ||||| | | || || || | | | || |||||
Sbjct 245168 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT--GGTGTACTCCACCACCTCTGTGCA 245111
Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822
|| || || || |||||||| || | || || || || ||||| |||| || || ||
Sbjct 245110 GAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTC 245051
Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881
||| || || || | || || || ||||| |||| || || || || || | |||||
Sbjct 245050 CTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAG 244991
Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAA 71939
| || | ||||| | | |||| ||| ||| | || ||| ||||| |
Sbjct 244990 CTGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCT 244932
Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCA 71998
|| |||||||| |||||||| ||| | ||| | || ||||| || | ||||||||||
Sbjct 244931 TC--TCGAACTCCTCTCCCCA-GCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCA 244875
Query 71999 ATGACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 72056
| ||||| || | | || | |||| ||||| || || || || ||||| | ||
Sbjct 244874 AGGACCAGTCCTGGTTGCTC-TCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCG 244816
Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116
|| ||| || ||||||| ||| |||||||| |||||||| ||||| || || || |||||
Sbjct 244815 TAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 244757
Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176
| | | || | ||||||||||||| ||| ||||| | | || || | |||||
Sbjct 244756 GTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTT 244697
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|| ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | ||
Sbjct 244696 GCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCC 244637
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||||| || ||||| || | ||| |||||||| | | || || ||| | |
Sbjct 244636 GTTGGAGTTGCCGTTGGTGCCAGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGC 244577
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| || || || || || || || || | ||||| | || | || || |||||
Sbjct 244576 CACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGAT 244517
Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416
||| || || || || ||| ||||| | || || || ||||| |||| || | || |
Sbjct 244516 GCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTT 244457
Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476
|| || || || || | ||| ||||| ||||| || ||||| || || ||||| || ||
Sbjct 244456 GGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTT 244397
Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536
||| ||||| || || | || || || | || || || |||| || | ||| |
Sbjct 244396 GTAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAG 244337
Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596
||| ||||| || | || | | || || || |||| || |||||| ||||
Sbjct 244336 CATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAG 244277
Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656
||| || ||||| || ||||||| || || |||| || ||||| || ||||| ||
Sbjct 244276 AGTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGAGGAATTAAG 244217
Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTT 72715
||||| | || | || || || | || | ||| || || || ||||| ||
Sbjct 244216 GCGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTG-- 244160
Query 72716 TCCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772
|| || || ||| || || ||| ||| | || |||||||| || || || | |
Sbjct 244159 -CCGTTTGTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCT 244101
Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832
| || || |||||||| || || || ||||| || || ||||| || ||||| || || |
Sbjct 244100 TCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGG 244041
Query 72833 GATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTG 72892
| |||| || || ||||| || || || || || || ||||| | || || || |
Sbjct 244040 GGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGG 243981
Query 72893 TTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 72952
| || || | || | || ||||| |||||||| | || | | ||||| | | |
Sbjct 243980 TGACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGT 243921
Query 72953 CAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010
| | ||| | ||| || || || |||| || || || ||||||||||| ||||| ||
Sbjct 243920 CCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 243863
Score = 102 bits (112), Expect = 1e-16
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || ||||| || || ||||| ||| | || || || ||||| || |
Sbjct 246090 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 246031
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| |||||| || || |||||||||||||| | |||||| ||||| | | | ||||
Sbjct 246030 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 245971
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036
| || | |||||||||| |||||||| | |||| | || |||||
Sbjct 245970 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 245922
>seq577
Length=410616
Score = 120 bits (132), Expect = 4e-22
Identities = 128/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
||||||||||||| ||||| || || |||||| ||| | || || || |||||||| |
Sbjct 149108 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 149167
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| |||||||| ||||||||| ||| || | ||||| ||||| || | || || |
Sbjct 149168 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 149227
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036
| || | |||||||||| |||||||| | |||| | |||||||||
Sbjct 149228 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 149276
>seq990
Length=431866
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| |||| ||| || | |||||| || || || || ||||| ||||| | ||| |
Sbjct 238463 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTTAGGCCAGGCATCAGGCCTCTCTTCT 238404
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || | || || || ||||| ||||||||||| || || || |||||||
Sbjct 238403 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCAAAGG 238344
Query 42207 CAATAAGTCTCTCTCC 42222
| | | |||||||||
Sbjct 238343 CCACCACTCTCTCTCC 238328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670988294350880
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