Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2088 159 5e-34 seq1522 113 6e-20 seq646 111 2e-19 >seq2088 Length=212312 Score = 159 bits (176), Expect = 5e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| |||| || || || || ||||||||||| |||||||| | || ||| Sbjct 147451 TTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAG 147392 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| |||| |||||||||||||| || |||||||||| ||| | || || Sbjct 147391 CAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTC 147332 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || || |||||||| || |||||||| ||||| | | |||| ||| | ||||||| Sbjct 147331 TCCCCAAAAATGGCGTTCGGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGCTCCACA 147272 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || |||| ||| ||||| || | ||| ||| || ||||| || |||||||| Sbjct 147271 GCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 147216 Score = 127 bits (140), Expect = 3e-24 Identities = 183/256 (71%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| |||| |||||||| ||| ||||||| ||| ||||| || Sbjct 145899 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 145840 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||| ||| || ||||| | |||||| || | ||||||||| || ||||||||| Sbjct 145839 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 145780 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || ||||| || || ||||| || || ||||| | ||| | || || Sbjct 145779 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGCGAAGCGCTGAGAGTCTGGG 145720 Query 9790 ACTTCGGGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTT 9847 || | || || ||| ||| | ||||| ||||| || ||| || || |||| | Sbjct 145719 ACGTGTGGCGGGTAGTGCATTTCAGCACC--AACATCCTTAACCAGCGGAGGGTACACCT 145662 Query 9848 CACCGTCAATAATCTG 9863 | |||| | |||||| Sbjct 145661 CTCCGTTTACAATCTG 145646 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10284 AAGTCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343 || |||||| ||| || | ||| ||||| || || ||||| ||||| || | Sbjct 144939 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGA 144880 Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403 | ||| ||||| || ||||| | |||||||||||| |||| | |||||||||||||| Sbjct 144879 GTGTAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAA 144820 Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATC 10431 | ||||| |||||||||| || ||||| Sbjct 144819 GTAGGAGGACTGTCAATCATATGGGATC 144792 >seq1522 Length=231901 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| | || || || | || ||||| |||||||| |||||||| | |||||| Sbjct 122328 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 122269 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| ||| |||||||||||||||||| || || |||| || | ||||| Sbjct 122268 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCGCCCATTTCCACCATGCTT 122209 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || ||||| || || || || | ||| |||| || || |||| ||| || || | | Sbjct 122208 TCTCCGAATATCGCCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 122149 Query 8921 GCCTCGATGTCTCCGTA 8937 || ||||| || || || Sbjct 122148 GCGTCGATATCCCCATA 122132 >seq646 Length=297705 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || || |||||||||||||| |||||||| | || ||| |||| ||| | | ||| Sbjct 224527 TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATTCCCAAGCAGG 224586 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| ||||| || || || |||| ||| | |||||||| ||||| |||| |||||| Sbjct 224587 CCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATATGGAGTTGGGG 224646 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | || |||| || || || | || ||||||| || || ||||| ||||| || Sbjct 224647 CGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCCAGGGCGTCAATGTCACCGTAGAG 224705 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||||||||||| |||||||| || || || |||||| ||| |||||||| Sbjct 231202 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCG 231261 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 | ||||| | || ||||| | |||||| ||||| |||||||| || |||||||| || Sbjct 231262 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 231321 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9777 || || || || || || || | || || |||| || || ||| Sbjct 231322 AGGCCTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGC 231366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708365488198720