Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13]
17,988 sequences; 815,144,743 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq722 125 6e-24
seq2100 107 2e-18
>seq722
Length=280156
Score = 125 bits (138), Expect = 6e-24
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| |||| || | ||||| ||| | || || ||||| || | || || || |
Sbjct 192180 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAC 192121
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| ||||||||||| || ||||||||| || ||||| || ||||||
Sbjct 192120 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGA 192061
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| |||||||| || | ||| |||||||| ||| | | || ||| | | || ||
Sbjct 192060 ATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACC 192001
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014
|| | |||||||| || ||||| || |||||||| || |||||||| |||||
Sbjct 192000 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTTACA 191947
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839
|||||| |||| | | ||||| ||| | || || ||||| || | ||| || ||
Sbjct 192409 TCCTCCCCTCAGGCAGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGA 192350
Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899
|| ||| | ||| ||||||||||| || ||||||||| || ||||| || |||||
Sbjct 192349 CAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGG 192290
Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959
||| ||||||| || | ||| |||||||| ||| | | || ||| | | || ||
Sbjct 192289 AATGTCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 192230
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | ||||| || || ||||| || |||||||| || ||||||||||
Sbjct 192229 CTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATGC 192180
>seq2100
Length=111253
Score = 107 bits (118), Expect = 2e-18
Identities = 156/219 (71%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | || ||||| || || | ||| || ||| || ||| | ||| |||
Sbjct 27596 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 27655
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| |||||| ||||||| | || ||||| || || || || || || || || |
Sbjct 27656 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 27715
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| || | | |||||| | | || || |||| |||||||||||
Sbjct 27716 ATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTG 27775
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACA 95017
|| || || |||||||||||||||||||| ||| || ||
Sbjct 27776 CCGGTGAGGGTTTTCACAAAGATCTGCAT-CTTGCACCA 27813
Score = 102 bits (112), Expect = 7e-17
Identities = 173/250 (69%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 94762 TTTTTTAAAAT--TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819
|| |||| ||| ||||| || || |||| || | || | ||| | ||||||||
Sbjct 27329 TTCTTTAGAATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCT 27388
Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879
||||| | ||| || || | ||| | ||| |||||||| |||||| |||||||
Sbjct 27389 TTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATC 27448
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
| || ||||| || || || || || || || || | || || ||||||||| |
Sbjct 27449 AGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCA 27508
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| |||||| | | || || || | ||||||||||| || || || || || || |||
Sbjct 27509 ATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAG 27568
Query 95000 ATCTGCATGC 95009
||||||||||
Sbjct 27569 ATCTGCATGC 27578
Score = 95.1 bits (104), Expect = 1e-14
Identities = 163/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||||| || || |||| || | || | ||| | |||||||| || || | ||| |
Sbjct 23152 TTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGT 23211
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || | ||| | |||||||||||| || || ||||||| | || ||||| |
Sbjct 23212 AGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGT 23271
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| || || || || || || || | ||||| ||||||||| | | ||||| |
Sbjct 23272 CAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGG 23331
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| || || || | ||||||||||| ||||| || || || || |||||||||||||
Sbjct 23332 GTTCCACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGC 23388
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | || || ||||| || | ||| || || || ||| | ||| |||
Sbjct 23406 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 23465
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| |||||| ||||||| | || |||||||| || || || || || || || |
Sbjct 23466 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGG 23525
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||||||| | | ||||| | | || || || | |||||||| ||
Sbjct 23526 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 23585
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || || || |||||||||||||
Sbjct 23586 CCGGTGAGGGTCTTGACGAAGATCTGCATGC 23616
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| ||||| ||||| | || || || || ||| | ||| |||||||| |||||
Sbjct 23646 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCA 23705
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
||||||| | || ||||| || || || || || || || || | ||||| ||||||
Sbjct 23706 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 23765
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
||| | | ||||| | | || || || | ||||||||||| || || || ||
Sbjct 23766 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 23825
Query 94991 TTCACAAAGATCTGCATGCTT 95011
|| ||||||||||||||| ||
Sbjct 23826 TTGACAAAGATCTGCATGTTT 23846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448190401723680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |