Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq722 125 6e-24 seq2100 107 2e-18 >seq722 Length=280156 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | ||||| ||| | || || ||||| || | || || || | Sbjct 192180 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAC 192121 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||||||||| || ||||||||| || ||||| || |||||| Sbjct 192120 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGA 192061 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | ||| |||||||| ||| | | || ||| | | || || Sbjct 192060 ATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACC 192001 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 || | |||||||| || ||||| || |||||||| || |||||||| ||||| Sbjct 192000 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTTACA 191947 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| |||| | | ||||| ||| | || || ||||| || | ||| || || Sbjct 192409 TCCTCCCCTCAGGCAGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGA 192350 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| | ||| ||||||||||| || ||||||||| || ||||| || ||||| Sbjct 192349 CAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGG 192290 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||||| || | ||| |||||||| ||| | | || ||| | | || || Sbjct 192289 AATGTCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 192230 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || ||||| || |||||||| || |||||||||| Sbjct 192229 CTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATGC 192180 >seq2100 Length=111253 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || ||||| || || | ||| || ||| || ||| | ||| ||| Sbjct 27596 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 27655 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| ||||||| | || ||||| || || || || || || || || | Sbjct 27656 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 27715 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | |||||| | | || || |||| ||||||||||| Sbjct 27716 ATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTG 27775 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACA 95017 || || || |||||||||||||||||||| ||| || || Sbjct 27776 CCGGTGAGGGTTTTCACAAAGATCTGCAT-CTTGCACCA 27813 Score = 102 bits (112), Expect = 7e-17 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 94762 TTTTTTAAAAT--TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 || |||| ||| ||||| || || |||| || | || | ||| | |||||||| Sbjct 27329 TTCTTTAGAATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCT 27388 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 ||||| | ||| || || | ||| | ||| |||||||| |||||| ||||||| Sbjct 27389 TTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATC 27448 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 | || ||||| || || || || || || || || | || || ||||||||| | Sbjct 27449 AGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCA 27508 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||| | | || || || | ||||||||||| || || || || || || ||| Sbjct 27509 ATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAG 27568 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 27569 ATCTGCATGC 27578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| || || |||| || | || | ||| | |||||||| || || | ||| | Sbjct 23152 TTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGT 23211 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||||||| || || ||||||| | || ||||| | Sbjct 23212 AGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGT 23271 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || || || | ||||| ||||||||| | | ||||| | Sbjct 23272 CAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGG 23331 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | ||||||||||| ||||| || || || || ||||||||||||| Sbjct 23332 GTTCCACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGC 23388 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || || ||||| || | ||| || || || ||| | ||| ||| Sbjct 23406 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 23465 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| ||||||| | || |||||||| || || || || || || || | Sbjct 23466 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGG 23525 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | ||||| | | || || || | |||||||| || Sbjct 23526 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 23585 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 23586 CCGGTGAGGGTCTTGACGAAGATCTGCATGC 23616 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||| ||||| | || || || || ||| | ||| |||||||| ||||| Sbjct 23646 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCA 23705 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || ||||| || || || || || || || || | ||||| |||||| Sbjct 23706 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 23765 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | | || || || | ||||||||||| || || || || Sbjct 23766 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 23825 Query 94991 TTCACAAAGATCTGCATGCTT 95011 || ||||||||||||||| || Sbjct 23826 TTGACAAAGATCTGCATGTTT 23846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448190401723680