Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq885 174 2e-39 seq148 174 2e-39 seq189 172 9e-39 seq992 168 1e-37 seq1542 163 4e-36 seq561 145 1e-30 >seq885 Length=372024 Score = 174 bits (192), Expect = 2e-39 Identities = 203/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 110950 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 111009 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || |||||||||||| |||| || | |||| || |||| Sbjct 111010 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 111069 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 111070 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 111129 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 111130 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 111189 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || ||| ||||| || || Sbjct 111190 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 111223 Score = 174 bits (192), Expect = 2e-39 Identities = 203/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 120904 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 120845 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 120844 TCGTCGCCTGGCTCGCCGTGGTGGGGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 120785 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 120784 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 120725 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 120724 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 120665 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || ||| ||||| || || Sbjct 120664 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 120631 >seq148 Length=500830 Score = 174 bits (192), Expect = 2e-39 Identities = 203/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 16565 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 16506 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || |||||||||||| |||| || | |||| || |||| Sbjct 16505 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 16446 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 16445 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 16386 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 16385 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 16326 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || ||| ||||| || || Sbjct 16325 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 16292 >seq189 Length=469626 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 76060 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 76001 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 76000 TCGTCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 75941 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 75940 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 75881 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 75880 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTAGTGTACGCTCTCAAGAGGCAGGG 75821 Query 16672 CCG 16674 ||| Sbjct 75820 CCG 75818 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 98906 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 98847 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 98846 ACGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 98787 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 98786 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 98727 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| || ||| |||||||| | || || || | || | || || Sbjct 98726 GCACGCTAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 98667 Query 16672 CCG 16674 ||| Sbjct 98666 CCG 98664 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 65058 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 65117 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 65118 TCGTCGCCTGGCTCGCCGTGGTGGGGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 65177 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||| | ||| ||| |||| |||||| || ||| ||||| Sbjct 65178 CCGCGGTGTGCTCAAGGTCTTCTTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 65237 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 65238 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTAGTGTACGCTCTCAAGAGGCAGGG 65297 Query 16672 CCG 16674 ||| Sbjct 65298 CCG 65300 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 109290 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 109231 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 109230 TCGTCGCCTGGCTCGCCGTGGTGGGGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 109171 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||| | ||| ||| |||| |||||| || ||| ||||| Sbjct 109170 CCGCGGTGTGCTCAAGGTCTTCTTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 109111 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 109110 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 109051 Query 16672 CCG 16674 ||| Sbjct 109050 CCG 109048 >seq992 Length=230319 Score = 168 bits (186), Expect = 1e-37 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 225281 CGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 225340 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || |||||||||||| |||| || | |||| || |||| Sbjct 225341 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 225400 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 225401 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 225460 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || | ||||| |||||| ||||||| Sbjct 225461 GCACGCCAAGAGGAAGACCGTCACCGCCATGGA 225493 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 218444 CGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 218503 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || | |||||| |||| || | |||| || |||| Sbjct 218504 CCGCCGTCTGGCTCGCCGCGGGGGGGGCAAGCGGATCTCCGGCCTCATCTACGAGGAGAC 218563 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 218564 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 218623 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 218624 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 218683 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 218684 CCGCACTCTGTACGGCTTCGGAGGTTAA 218711 >seq1542 Length=159976 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| || || Sbjct 32321 CGCCAAGCGCCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCGGCCAT 32262 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 32261 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 32202 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| ||| |||| ||| || | || ||||| Sbjct 32201 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 32142 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 32141 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 32082 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 32081 CCGCACTCTGTACGGCTTCGGAGGTTAA 32054 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| || || Sbjct 55959 CGCCAAGCGCCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCGGCCAT 55900 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 55899 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 55840 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| ||| |||| ||| || | || ||||| Sbjct 55839 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 55780 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 55779 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 55720 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 55719 CCGCACTCTGTACGGCTTCGGAGGTTAA 55692 >seq561 Length=460065 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| || ||||||||||| || || Sbjct 446845 CGCCAAGCGGCACCGTAAAGTCCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 446786 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || |||||||||||| |||| || || |||| || |||| Sbjct 446785 CCGCCGCCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 446726 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| ||| |||| ||| || | || || || Sbjct 446725 CCGCGGCGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTGACGTACACGGA 446666 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 446665 GCACGCCAAGAGGAAGACTGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 446606 Query 16672 CCG 16674 ||| Sbjct 446605 CCG 446603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79058753445684