Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq86 434 1e-116 seq990 111 2e-19 seq577 107 2e-18 seq4 93.3 5e-14 >seq86 Length=659436 Score = 434 bits (480), Expect = 1e-116 Identities = 1291/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 |||||||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 245827 CTGAATGGATCCGTTGTTTGCAATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 245768 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | | | ||||| || || || || | || || ||||| |||| || || Sbjct 245767 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 245708 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 245707 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 245648 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 245647 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 245588 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || || | ||| | | Sbjct 245587 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 245530 Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 | || || || || |||||| || ||| || | ||||| ||||| || || || Sbjct 245529 TACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCT 245470 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 | || ||||| || || ||||| | || ||| || ||||| |||||||||| | Sbjct 245469 GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 245410 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || ||||| |||| || || |||| | || || || || || || Sbjct 245409 TTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCC 245350 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 | || || || || || ||||| || || || | ||| || || | || ||||| || Sbjct 245349 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGG 245290 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 245289 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 245230 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACA 62897 ||| || || || || || ||| | || ||||||| | ||| | Sbjct 245229 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 245170 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 62955 || ||||| || || ||||| ||||| | | | | | || | | | ||| |||| Sbjct 245169 GAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCTGTGC 245112 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | || || || || ||||| || || | || || || || ||||| |||| || || | Sbjct 245111 AGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 245052 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 245051 CCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 244992 Query 63076 -CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA--GTGTATACA 63132 | || | ||||| | | || |||| ||| | || ||| ||||| | Sbjct 244991 GCTGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGC 244933 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 || |||||||| |||||||| | ||||| || ||||| || |||||||||| Sbjct 244932 TTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCA 244875 Query 63193 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 63251 | ||||| || || || ||||| ||||| || || || || ||||| | || | Sbjct 244874 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGT 244815 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | ||| || ||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 244814 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 244756 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | || | ||||||||||||| ||| ||||| | | || || | ||||| Sbjct 244755 TCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG 244696 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | ||| Sbjct 244695 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 244636 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || | || ||||| || | ||| |||||||| | | || || || | | Sbjct 244635 TTGGAGTTGCCGTTGGTGCCAGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 244576 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | || || || || || || || || | ||||| | || | ||||| ||||| Sbjct 244575 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 244516 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 || || ||||| || || ||||| | || || || ||||| |||| || | || | Sbjct 244515 CCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 244456 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 244455 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 244396 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||| || || | ||| || || | || || || || | || | ||| | | Sbjct 244395 TAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 244336 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||| || | || | | || ||| || |||| || |||||| |||| | Sbjct 244335 ATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGA 244276 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 || || ||||| || ||||||| || || |||| || ||||| || || || || Sbjct 244275 GTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGAGGAATTAAGG 244216 Query 63852 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTTT 63910 ||||| | || | || || || | || | |||| | || || ||||| || Sbjct 244215 CGGTCCTTGTTTTCCATGACGATGTCGAGCGTC-TCCTTGGAGATCATGGGAGAGTG--- 244160 Query 63911 CCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63967 || || || ||| || || ||| ||| | || |||||||| || || || | || Sbjct 244159 CCGTTTGTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTT 244100 Query 63968 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGG 64027 || || |||||||| || || || ||||| || || ||||| || ||||| || || || Sbjct 244099 CTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 244040 Query 64028 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 64087 |||| || || ||||| || || || || || || ||||| | || || || || Sbjct 244039 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGGT 243980 Query 64088 TACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64147 || || | || | || || || |||||||| | || | | ||||| | | || Sbjct 243979 GACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTC 243920 Query 64148 CGTGTTTAAGCCATAACATAATTTTCTA-ATACGAGACGTGATTTTATCAAACATGAC 64204 || ||| | ||| || || || |||| || || || ||||||||||| |||||||| Sbjct 243919 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 243863 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || ||||| || |||| || || || ||||| | Sbjct 246090 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 246031 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 246030 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 245971 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 245970 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 245922 >seq990 Length=431866 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| ||| || || |||||| || || || || ||||| ||||| | ||| | Sbjct 238463 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTTAGGCCAGGCATCAGGCCTCTCTTCT 238404 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||||| || ||||| ||||||||||| || || |||||||||| Sbjct 238403 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCAAAGG 238344 Query 33446 CAATAAGTCTCTCTCC 33461 | | | ||||||||| Sbjct 238343 CCACCACTCTCTCTCC 238328 >seq577 Length=410616 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||||||||||| ||||| || || |||||| || | || || || || || || | Sbjct 149108 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 149167 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| ||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 149168 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 149227 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | |||||||||| |||||||| | |||| | ||||||||| Sbjct 149228 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 149276 >seq4 Length=1291530 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||| || ||||| ||||||||||| | || || || ||||| ||||| | ||| | Sbjct 279436 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 279495 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| | || | ||||||||| || || ||||| || || || ||||| || || | Sbjct 279496 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 279555 Query 33446 CAATAAGTCTCTCTCC 33461 | | ||| | ||| || Sbjct 279556 CCACAAGACGCTCCCC 279571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622807130322080