Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2100 105 6e-18 >seq2100 Length=111253 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | ||||| ||| ||||||| | || |||| Sbjct 23850 ACGCAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGG 23791 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || | ||||| || ||| | ||| |||||| || || || || || || | Sbjct 23790 AGCCCAGCGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCC 23731 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 ||||||| ||| || | || ||||| || || || | ||||||| ||||| || | Sbjct 23730 CTGACCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTG 23671 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 | |||||||| |||||||||||||| || || Sbjct 23670 ACTACAATATCCAAAAAGAATCCACCCTCCA 23640 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| ||| ||||||| | || |||||| | | Sbjct 27804 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCCAGT 27745 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| || || || || || || |||||||| Sbjct 27744 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 27685 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||||| ||||| || ||| ||||| Sbjct 27684 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 27625 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||||||||| || || Sbjct 27624 ATCCAGAAAGAATCCACACTCCA 27602 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| ||| ||||||| | || || ||| | | Sbjct 27576 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTTGAGCCCAGT 27517 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| || || || || || || |||||||| Sbjct 27516 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 27457 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||||| ||||| | || ||||| Sbjct 27456 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 27397 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || ||||||||||| || || || Sbjct 27396 ATCCAAAAAGAATCTACCCTCCA 27374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433233002044220