Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13]
17,988 sequences; 815,144,743 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2100 122 7e-23
seq722 104 2e-17
seq86 86.0 5e-12
>seq2100
Length=111253
Score = 122 bits (134), Expect = 7e-23
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || ||||| ||||| | ||||| ||||| |||| ||||| ||||| ||
Sbjct 27807 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCC 27748
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | || || | || || || || || |||||||| || || || ||
Sbjct 27747 AGTGACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 27688
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || || |||||||| || ||| | || ||| ||||||| | ||||| |||
Sbjct 27687 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 27628
Query 22396 AACATTCAAAAAGAATCCAC 22415
||||| || |||||||||||
Sbjct 27627 AACATCCAGAAAGAATCCAC 27608
Score = 113 bits (124), Expect = 4e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| ||||| || ||||| || || | ||||| ||||| |||| || || ||||| |
Sbjct 23846 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCC 23787
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
|| ||| ||| | || | |||| ||||| || || |||||||| || || || ||
Sbjct 23786 CAGCGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGA 23727
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
|| || | || || ||||| || || ||| | || ||| ||||||| | || || ||
Sbjct 23726 CCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 23667
Query 22395 CAACATTCAAAAAGAATCCACC 22416
||| || |||||||||||||||
Sbjct 23666 CAATATCCAAAAAGAATCCACC 23645
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| ||||| |||| || || || || |||
Sbjct 27576 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTTGAGCCCAGT 27517
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || || || |||||||| || || || || ||
Sbjct 27516 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 27457
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || |||||||| || ||| | || ||| ||||||| | || || ||||||
Sbjct 27456 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 27397
Query 22399 ATTCAAAAAGAATCCACC 22416
|| ||||||||||| |||
Sbjct 27396 ATCCAAAAAGAATCTACC 27379
>seq722
Length=280156
Score = 104 bits (114), Expect = 2e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271
|||||||||||| ||||| || ||||| | || || || || |||| || || |||||
Sbjct 191947 TGTAAAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGA 192006
Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331
||| |||||| | || | | || ||| ||||| || || || || ||||| ||
Sbjct 192007 GCCCAGTGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCC 192066
Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391
|| || || | || || ||||| || |||||| | || ||| ||||||| | || ||
Sbjct 192067 TGACCAGCAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGA 192126
Query 22392 TTACAACATTCAAAAAGAATCCACC 22416
||||| || || || || ||||||
Sbjct 192127 CTACAATATCCAGAAGGAGTCCACC 192151
>seq86
Length=659436
Score = 86.0 bits (94), Expect = 5e-12
Identities = 255/384 (66%), Gaps = 17/384 (4%)
Strand=Plus/Minus
Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074
|| |||| ||||| |||| || || | ||||| |||||| || | |||| ||| |
Sbjct 244854 TCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTC 244795
Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134
||||| || |||| ||||| || ||||| ||| | | |||| |||||||
Sbjct 244794 TGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCAC 244735
Query 130135 GGTTCAACATAAATTGCCATTGCGCCCT---TCCGTTTGCCCCCTTGGTCAACGTGGCGC 130191
||||| | || || || | || || || ||||| || ||||| |||| |||
Sbjct 244734 GGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGA 244675
Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251
| | |||||||| |||| || ||| | |||||||||||| ||||||| ||||
Sbjct 244674 GCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCA 244615
Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCG---CCGCCA 130308
| ||| | || || || ||| || ||| | ||| | | | |||| ||||||
Sbjct 244614 GCGATGTAGCTTCC-CG---TCGATCG-GATGCA-GCTCACCGCCACGCCGATCCCGCCA 244561
Query 130309 ---AATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTC 130364
| || || || | |||||| | || | || || || || ||||| |||| |||||
Sbjct 244560 GCGGACTTGGAAATGAGCGCGCACT-GCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTC 244502
Query 130365 TTCTTTAATGTTTAGGAGGAAACA 130388
|| || ||| | || ||||| ||
Sbjct 244501 GTCCTTCATGGTGAGCAGGAAGCA 244478
Score = 82.4 bits (90), Expect = 6e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756
|| ||||||| ||||||||||| |||| ||| ||||||| || | || | |
Sbjct 245172 ATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTG 245113
Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816
|| | || || ||| |||||||||| | || || || || ||| ||||||||||
Sbjct 245112 CAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCG 245053
Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCG 129849
|| ||||| | |||||| ||||| || ||||||
Sbjct 245052 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCG 245020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419635983555220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |