Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2100 122 7e-23 seq722 104 2e-17 seq86 86.0 5e-12 >seq2100 Length=111253 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| ||||| | ||||| ||||| |||| ||||| ||||| || Sbjct 27807 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCC 27748 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || | || || || || || |||||||| || || || || Sbjct 27747 AGTGACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 27688 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || |||||||| || ||| | || ||| ||||||| | ||||| ||| Sbjct 27687 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 27628 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || ||||||||||| Sbjct 27627 AACATCCAGAAAGAATCCAC 27608 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | ||||| ||||| |||| || || ||||| | Sbjct 23846 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCC 23787 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || ||| ||| | || | |||| ||||| || || |||||||| || || || || Sbjct 23786 CAGCGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGA 23727 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || | || || ||||| || || ||| | || ||| ||||||| | || || || Sbjct 23726 CCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 23667 Query 22395 CAACATTCAAAAAGAATCCACC 22416 ||| || ||||||||||||||| Sbjct 23666 CAATATCCAAAAAGAATCCACC 23645 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| ||||| |||| || || || || ||| Sbjct 27576 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTTGAGCCCAGT 27517 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || || |||||||| || || || || || Sbjct 27516 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 27457 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| ||||||| | || || |||||| Sbjct 27456 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 27397 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||||||||| ||| Sbjct 27396 ATCCAAAAAGAATCTACC 27379 >seq722 Length=280156 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||||||||||| ||||| || ||||| | || || || || |||| || || ||||| Sbjct 191947 TGTAAAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGA 192006 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| |||||| | || | | || ||| ||||| || || || || ||||| || Sbjct 192007 GCCCAGTGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCC 192066 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || | || || ||||| || |||||| | || ||| ||||||| | || || Sbjct 192067 TGACCAGCAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGA 192126 Query 22392 TTACAACATTCAAAAAGAATCCACC 22416 ||||| || || || || |||||| Sbjct 192127 CTACAATATCCAGAAGGAGTCCACC 192151 >seq86 Length=659436 Score = 86.0 bits (94), Expect = 5e-12 Identities = 255/384 (66%), Gaps = 17/384 (4%) Strand=Plus/Minus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074 || |||| ||||| |||| || || | ||||| |||||| || | |||| ||| | Sbjct 244854 TCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTC 244795 Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 ||||| || |||| ||||| || ||||| ||| | | |||| ||||||| Sbjct 244794 TGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCAC 244735 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCT---TCCGTTTGCCCCCTTGGTCAACGTGGCGC 130191 ||||| | || || || | || || || ||||| || ||||| |||| ||| Sbjct 244734 GGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGA 244675 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251 | | |||||||| |||| || ||| | |||||||||||| ||||||| |||| Sbjct 244674 GCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCA 244615 Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCG---CCGCCA 130308 | ||| | || || || ||| || ||| | ||| | | | |||| |||||| Sbjct 244614 GCGATGTAGCTTCC-CG---TCGATCG-GATGCA-GCTCACCGCCACGCCGATCCCGCCA 244561 Query 130309 ---AATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTC 130364 | || || || | |||||| | || | || || || || ||||| |||| ||||| Sbjct 244560 GCGGACTTGGAAATGAGCGCGCACT-GCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTC 244502 Query 130365 TTCTTTAATGTTTAGGAGGAAACA 130388 || || ||| | || ||||| || Sbjct 244501 GTCCTTCATGGTGAGCAGGAAGCA 244478 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || ||||||| ||||||||||| |||| ||| ||||||| || | || | | Sbjct 245172 ATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTG 245113 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 || | || || ||| |||||||||| | || || || || ||| |||||||||| Sbjct 245112 CAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCG 245053 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCG 129849 || ||||| | |||||| ||||| || |||||| Sbjct 245052 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCG 245020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419635983555220