Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq86 102 2e-16 seq2097 93.3 9e-14 seq1704 93.3 9e-14 seq1156 93.3 9e-14 seq58 93.3 9e-14 seq1751 91.5 3e-13 seq315 91.5 3e-13 seq194 91.5 3e-13 seq971 89.7 1e-12 seq15 87.8 4e-12 seq1399 86.0 1e-11 >seq86 Length=659436 Score = 102 bits (112), Expect = 2e-16 Identities = 592/931 (64%), Gaps = 31/931 (3%) Strand=Plus/Minus Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 ||||| | ||| ||||| ||| | || || ||||| | || | |||||| |||| Sbjct 245529 TACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCT 245470 Query 293587 TCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 | | ||| ||||| ||||| | || || ||| ||| ||||||||||| | Sbjct 245469 GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 245410 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAG---TCAAACGGCATCTT-CAGCTGGAAGAACACATC 293702 |||||| || | || || | | || ||||| || | || | ||| ||| |||| Sbjct 245409 TTGAGCA-GCTGGGCT--TCGGGGCTTTCGAACGG-ATGTCGCATCAGGATGAAGGCATC 245354 Query 293703 CTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTC 293762 ||||||||| || || | || | || | | ||||||||| |||||| || || Sbjct 245353 GGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTC 245294 Query 293763 GGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTGAC 293822 ||| |||| || | | || ||| || ||| ||||| ||| || |||||| Sbjct 245293 GGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG- 245235 Query 293823 ATGCTTGCGG--AGGTCCTCAAAGTCAAATGCA---TCATTCTTGACATAGTTCTTGAGC 293877 || | || || | || ||||| || | || | |||| || | ||||| Sbjct 245234 -TGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGG 245176 Query 293878 ACGATGCTACCGATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCA 293937 ||||| | | | || || || ||| ||||| ||||||||| || | ||| Sbjct 245175 GCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCT 245116 Query 293938 GCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACA 293997 | |||||||| |||| |||||||||||| || ||| || |||| ||| | Sbjct 245115 GTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAA 245056 Query 293998 CTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTC 294057 ||| |||| ||| | || ||| | || ||||| |||| | || |||| || | Sbjct 245055 GCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTAC 244996 Query 294058 CAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAA 294117 |||| | | ||||||||||| | ||| || |||| || |||||| ||||||| Sbjct 244995 CAGAGCTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAG 244936 Query 294118 AGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-AG 294176 |||| ||| | |||| || | || ||| || || |||||| ||| || | Sbjct 244935 AGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCG-CTGGGACACAT 244877 Query 294177 TAGAGACCA---CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACAT 294233 | ||||| |||| | ||||||| | ||||||||| || || || ||||| Sbjct 244876 CAAGGACCAGTCCTGG---TTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAA 244820 Query 294234 TGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCT-TGAT-TACGACGGAGGAGC 294291 ||||| || | || | ||| | | | ||||| ||| || | | | | || | Sbjct 244819 GGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTC--AGCTCC 244762 Query 294292 AGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCC---CTTC 294348 |||||||| | | |||| || |||||||| |||| || |||| ||| || Sbjct 244761 AGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTC 244702 Query 294349 CTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACG 294408 || || ||||||| | ||||| || ||| ||| | || ||||||| || || Sbjct 244701 TTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACC 244642 Query 294409 ATGCCATCGGACTCACCATTGGTTCC-GCGA 294438 | || | ||| | || ||||| || |||| Sbjct 244641 AATCCGTTGGAGTTGCCGTTGGTGCCAGCGA 244611 >seq2097 Length=111468 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 60441 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 60382 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 60381 GCCCCACGTTGGGC 60368 >seq1704 Length=143687 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 96541 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 96482 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 96481 GCCCCACGTTGGGC 96468 >seq1156 Length=203910 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 139526 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 139467 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 139466 CCCCACGTTGGGCGGA 139451 >seq58 Length=1141134 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 809080 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 809021 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 809020 GCCCCACGTTGGGC 809007 >seq1751 Length=140096 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 68847 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 68788 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 68787 CCCCACGTTGGGC 68775 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 77386 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 77327 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 77326 CCCCACGTTGGGC 77314 >seq315 Length=401937 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 194382 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 194323 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 194322 CCCCACGTTGGGC 194310 >seq194 Length=599432 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 580838 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 580779 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 580778 CCCCACGTTGGGC 580766 >seq971 Length=233873 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 38231 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 38290 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 38291 CCCACGTTGGGC 38302 >seq15 Length=898797 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 548699 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 548757 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 548758 TCGAGTCCCGGCAGAGA 548774 >seq1399 Length=339438 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 289885 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 289826 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 289825 TCCCGGCAGAGA 289814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027599913167908