Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2100 136 9e-27 seq722 120 7e-22 >seq2100 Length=111253 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || || |||| ||| || || ||||| || |||| Sbjct 23384 CATG-CCACCCCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGT 23442 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || ||||| || |||||||| | ||| ||| | Sbjct 23443 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAG 23502 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || || ||||| || || | ||||| | | Sbjct 23503 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCT 23562 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 23563 CAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 23614 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || || || | ||| ||||||||||||||| |||| Sbjct 23612 CATG-CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGT 23670 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || ||||| || |||||||| | ||| || | Sbjct 23671 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAG 23730 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || |||||||||||||| || || ||||| || || | ||||| | | Sbjct 23731 GGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCT 23790 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| || || ||||| || |||||||| || |||||||| Sbjct 23791 CCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 23842 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | || ||||| || ||||| | || ||||| || || Sbjct 27385 TTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 27444 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| || | ||||| || || ||||||||||| || || || ||||| Sbjct 27445 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 27504 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || || ||||| || || ||||| || |||||||| Sbjct 27505 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 27564 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 27565 GAAGATCTGCAT 27576 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || ||||| || || || | || || || || || Sbjct 23195 TTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 23254 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| || | ||||| || || |||||||||||||| || || ||||| Sbjct 23255 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 23314 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||| | ||| || || || ||||| || || || || || |||||||| Sbjct 23315 CTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGAC 23374 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 23375 GAAGATCTGCAT 23386 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || || || | ||| |||||| ||||| || |||| Sbjct 27574 CATG-CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGT 27632 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| | || ||||| || |||||||| | ||| || | Sbjct 27633 CGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAG 27692 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || || || || || || | || || | | Sbjct 27693 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCT 27752 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| || || ||||| || || || || || |||||||| Sbjct 27753 CCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 27804 >seq722 Length=280156 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | || ||||| || ||||| | ||||| || || ||| Sbjct 192144 TCCTTCTGGATATTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAG 192085 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || |||||||||||||| || || || |||||||| Sbjct 192084 ATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 192025 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| |||||||| || || || || ||| Sbjct 192024 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACG 191965 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 191964 AAAATCTGCAT 191954 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | ||||| || || ||| Sbjct 192372 TCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAG 192313 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||||||||||| || || || |||||||| Sbjct 192312 ATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 192253 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| |||||||| || || || || ||| Sbjct 192252 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACG 192193 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 192192 AAAATCTGCAT 192182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179382523575864