Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13]
17,988 sequences; 815,144,743 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2100 136 9e-27
seq722 120 7e-22
>seq2100
Length=111253
Score = 136 bits (150), Expect = 9e-27
Identities = 170/232 (73%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || || |||| ||| || || ||||| || ||||
Sbjct 23384 CATG-CCACCCCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGT 23442
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || ||||| | || ||||| || |||||||| | ||| ||| |
Sbjct 23443 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAG 23502
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || ||||||||||| || || || ||||| || || | ||||| | |
Sbjct 23503 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCT 23562
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 23563 CAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 23614
Score = 136 bits (150), Expect = 9e-27
Identities = 170/232 (73%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | || | || || || || | ||| ||||||||||||||| ||||
Sbjct 23612 CATG-CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGT 23670
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || ||||| | || ||||| || |||||||| | ||| || |
Sbjct 23671 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAG 23730
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || |||||||||||||| || || ||||| || || | ||||| | |
Sbjct 23731 GGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCT 23790
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| || || ||||| || |||||||| || ||||||||
Sbjct 23791 CCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 23842
Score = 125 bits (138), Expect = 2e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||||||||| || ||||| | || ||||| || ||||| | || ||||| || ||
Sbjct 27385 TTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 27444
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||||| | ||| || | ||||| || || ||||||||||| || || || |||||
Sbjct 27445 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 27504
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || || | || || || || ||||| || || ||||| || ||||||||
Sbjct 27505 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 27564
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 27565 GAAGATCTGCAT 27576
Score = 122 bits (134), Expect = 2e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| ||||| || ||||| | || ||||| || || || | || || || || ||
Sbjct 23195 TTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 23254
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||||| | ||| || | ||||| || || |||||||||||||| || || |||||
Sbjct 23255 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 23314
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||||| | ||| || || || ||||| || || || || || ||||||||
Sbjct 23315 CTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGAC 23374
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 23375 GAAGATCTGCAT 23386
Score = 113 bits (124), Expect = 1e-19
Identities = 165/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || || || | ||| |||||| ||||| || ||||
Sbjct 27574 CATG-CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGT 27632
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || ||||| || ||||| | || ||||| || |||||||| | ||| || |
Sbjct 27633 CGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAG 27692
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || ||||||||||| || || || || || || || | || || | |
Sbjct 27693 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCT 27752
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| || || ||||| || || || || || ||||||||
Sbjct 27753 CCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 27804
>seq722
Length=280156
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||| ||||| | || ||||| || ||||| | ||||| || || |||
Sbjct 192144 TCCTTCTGGATATTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAG 192085
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | || || |||||||||||||| || || || ||||||||
Sbjct 192084 ATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 192025
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || | || || || || ||||| |||||||| || || || || |||
Sbjct 192024 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACG 191965
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 191964 AAAATCTGCAT 191954
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || ||||| || ||||| | ||||| || || |||
Sbjct 192372 TCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAG 192313
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | || || ||||||||||||| || || || ||||||||
Sbjct 192312 ATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 192253
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || | || || || || ||||| |||||||| || || || || |||
Sbjct 192252 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACG 192193
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 192192 AAAATCTGCAT 192182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179382523575864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |