Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq86 163 3e-35 seq577 89.7 6e-13 seq4 87.8 2e-12 >seq86 Length=659436 Score = 163 bits (180), Expect = 3e-35 Identities = 887/1391 (64%), Gaps = 44/1391 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||||||||| Sbjct 245700 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 245641 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || |||||||| | | || | || || ||| Sbjct 245640 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 245581 Query 114062 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 114118 || || | |||||| | || | | |||| | || ||||| || ||||| Sbjct 245580 TTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTGG 245524 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCC 114178 ||||| || | | | ||||| ||||| |||||||||| ||||| | | || Sbjct 245523 AGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCTGCGGCG 245464 Query 114179 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 | |||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 245463 AGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGC 245404 Query 114239 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCT 114298 || ||| ||| | || |||| |||| || || || |||| || ||||| Sbjct 245403 AGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCC 245344 Query 114299 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACGGG 114357 ||||| |||| || || || | || | | | || ||| | ||| || || || Sbjct 245343 TGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCG-GCTTCGGGGACCGG 245285 Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417 || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 245284 GTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGC 245225 Query 114418 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 ||||| | | | || ||| | || |||| |||| ||| | |||||||| || Sbjct 245224 CAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGATGGA 245168 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 ||||| || || || | ||| ||||| |||||||| | | || || || | Sbjct 245167 GGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAG 245108 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || | || |||||||||| ||||| || || ||| |||| || || ||||| Sbjct 245107 GTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTT 245048 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT- 114656 ||| |||||||| |||||||| || || || ||||||| || || || | ||||| | Sbjct 245047 GTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG 244988 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | ||| || || | || | | ||| |||| ||| || | |||||||| | Sbjct 244987 CTGCGCCTTCACCACCCTC-TTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCT 244929 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGAC 114775 | ||||| || ||| | ||| ||||| || || ||||| || | | ||| Sbjct 244928 CGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCG-CTGGGACACATCAAGGAC 244870 Query 114776 CATTGACCACCCTCCTCAACACGCT--TCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 || | || | ||| ||| || ||||||| ||||| |||||||| | || ||| Sbjct 244869 CAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGA 244812 Query 114834 AGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 114892 | || || | | | ||| || | | || || || || ||||| ||||| Sbjct 244811 AAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCG 244753 Query 114893 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACC 114948 | | || |||||||||||||||||||| |||| | ||| || | | || Sbjct 244752 AACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG-CC 244694 Query 114949 AGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATC 115008 |||||| || || | || ||| || | || | ||||| || | | || | Sbjct 244693 GCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTT 244634 Query 115009 AGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGA--CA--TCATGGAT 115062 || | ||| || || || || || ||| | | || || || ||| | Sbjct 244633 GGAGTTGCCGTTGGTGCCAGCGATGT-AG-CTTCCCGTCGATCGGATGCAGCTCACCGC- 244577 Query 115063 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 115122 || || || || || || |||| || || ||||||||| | | || || |||| Sbjct 244576 ---CACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTA 244520 Query 115123 GATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCT 115182 ||| || ||||| ||| |||| | | || ||||||||||| |||| || |||| Sbjct 244519 GATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCC- 244461 Query 115183 TGGT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACAT 115239 ||| || || |||||||||||||| || | |||||| ||||| || | | |||| Sbjct 244460 -GGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAG 244403 Query 115240 CTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299 | ||||||||| | | | ||| |||||| |||||| || || | ||| |||| Sbjct 244402 GAGGTTGTAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCT 244343 Query 115300 CATAAACATGT 115310 ||| | ||||| Sbjct 244342 CATGAGCATGT 244332 >seq577 Length=410616 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||||| | ||||||||||||||| ||| ||||| ||||| Sbjct 150344 TAGATGTTGCTTGTGTACGCCTCAATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 150403 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| || || ||||| Sbjct 150404 GCTGTGGGCATCGGGGCCAAAAGCAGACTGTT 150435 >seq4 Length=1291530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||||| || ||| || || ||||||||||| || | ||||| Sbjct 279436 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 279495 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||| | || ||| ||||| || |||||||| || |||||||| ||||| | Sbjct 279496 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 279555 Query 126186 CAAAGAGACGCTC 126198 | | |||||||| Sbjct 279556 CCACAAGACGCTC 279568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597219285043040