Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq86 196 4e-45 seq577 95.1 1e-14 seq2100 84.2 2e-11 >seq86 Length=659436 Score = 196 bits (216), Expect = 4e-45 Identities = 894/1400 (64%), Gaps = 36/1400 (3%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | ||||| || Sbjct 244310 AAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGA 244369 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| || | ||| || ||| | | |||| | || | ||||| ||||| Sbjct 244370 GACATCGACGCTGCCATCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCC 244429 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| |||||| || || ||| ||| |||| || || ||||| Sbjct 244430 TCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTC 244489 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 ||| || || ||||||||| || ||||| || || || | |||||| | ||| Sbjct 244490 ACCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATT 244549 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196 ||||| | | ||||| || |||||| ||| | | | || | || |||||| Sbjct 244550 TCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACG-GGAAGCTA 244608 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| ||||| |||| | | || ||| | | | |||||| |||||||||| || Sbjct 244609 CATCGCTGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAA 244668 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCT 123313 | | | || ||||||||||||||||||| | | || || | || || || || Sbjct 244669 CACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCT 244728 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373 |||||||||||| | || |||| ||| || | | | || |||| || ||| Sbjct 244729 GGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 244788 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || ||| |||| | || | || ||||| || ||| | || || |||| ||| | Sbjct 244789 GGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAG 244848 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCG 123492 || | | || | ||||| | ||||||||| | || ||||||||| || || Sbjct 244849 AGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC-AGCGAGTGTCCCGGGCTGGACG 244907 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----A 123547 | | || | |||| || || | ||| | ||| ||| ||||| | | Sbjct 244908 AGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGA 244967 Query 123548 ACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 | ||| | || | | | ||| | | || | | || ||||| | || ||| Sbjct 244968 AGAGGGTGGTGAAGGCGCAGCA---GCTCTGGT--ACGCCATCATCGAGTCCCAGACCGA 245022 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 |||||| ||||| |||||||||||||| ||||| ||||||||||| | ||| ||| || Sbjct 245023 AACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAA 245082 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA---GCGATGC 123724 | |||| || || ||||| || || || ||| | || | | || |||| || | | Sbjct 245083 CCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGA 245142 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCG----AAA 123780 ||| |||||||| || || |||| || || | | || | |||| | | Sbjct 245143 CGAG---GTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGA 245199 Query 123781 ACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 ||| |||| | ||| | | ||| | | || || | || || || | | Sbjct 245200 GCGGA-CTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 245258 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 |||| || ||||| | || | || || | ||||| ||| || | | Sbjct 245259 ACAAGATCATCGACATCAACTACTACCCGGTCCCCGAAGCCGAGACGTCCAACAAGCGCC 245318 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCG-CATG 123959 |||| ||| |||| | ||| | || || ||||||| || || | || |||| ||| Sbjct 245319 ACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACAT- 245377 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 |||| ||||||| |||||| || |||| || | || || ||| || || || || Sbjct 245378 CCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCAC 245437 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 | ||| ||||||| ||||||||||| || | | |||| | ||||| | |||| | Sbjct 245438 GCCGCCCTGGAGGCCAGCTGCGAACTCGCCGCAGAGCTCGGCCCCTACGAGACATACGAG 245497 Query 124080 GGC-AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138 ||| ||||| | || || || | ||||||||||||||| | || ||||| | Sbjct 245498 GGCTCGCCCGTC-AGTAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCGACCGA 245556 Query 124139 TTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCG 124196 |||||||||||| | | || | | | |||| | ||||| || | ||| Sbjct 245557 CCTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACACGGCGTGAGGAACAGC 245614 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| || ||||| |||||| ||||| |||| || || || | || |||||||| ||| Sbjct 245615 CTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCC 245674 Query 124257 TTCGAGCCGTTCACTAACAA 124276 ||||| ||| ||| | ||| Sbjct 245675 ATCGAGGCGTACACCAGCAA 245694 >seq577 Length=410616 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 152054 GAGACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 151995 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || || | || ||||| ||| | || || ||||||||| Sbjct 151994 AATCTGGGCACCATCAAGTCCAGCAATCTCTGCACAGAGATCGTCGAATACA 151943 >seq2100 Length=111253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| ||||||||||| || || | ||| ||| ||| Sbjct 23634 ACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 23693 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | |||| | |||||||| || || ||||| || ||||| || Sbjct 23694 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 23753 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| |||| || | || | ||||||| | ||| || || || || | ||||| Sbjct 23754 ATTTTGGCCTTGA-CGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTT 23812 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| || ||||| Sbjct 23813 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 23842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451901567080480