Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13]
17,988 sequences; 815,144,743 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq2088 127 3e-24
seq1522 107 3e-18
seq646 91.5 2e-13
>seq2088
Length=212312
Score = 127 bits (140), Expect = 3e-24
Identities = 172/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
||||| || |||||||| || || || || || ||||||||||| ||||||||| |
Sbjct 147457 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 147398
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|| ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| |
Sbjct 147397 GGCGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 147338
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
|| |||| || || ||||| || || || || || || | | ||| | ||||||
Sbjct 147337 ATCGTCTCCCCAAAAATGGCGTTCGGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGC 147278
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| ||||| |||||||| || || || |||||| ||| || || || || || |||
Sbjct 147277 TCCACAGCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCT 147218
Score = 87.8 bits (96), Expect = 3e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
|||||| || || | ||| || |||||||| ||||| ||||| || | | ||
Sbjct 144936 TCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGAGTG 144877
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| |||||||| || ||| | ||||||||||| ||||| ||||| || ||||||
Sbjct 144876 TAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAAGTA 144817
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537
|| |||||||||||||| | ||| | ||||
Sbjct 144816 GGAGGACTGTCAATCATATGGGATCGTGCTA 144786
>seq1522
Length=231901
Score = 107 bits (118), Expect = 3e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001
||||||||||| || || || | || ||||| |||||||| |||||||| | ||||||
Sbjct 122328 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 122269
Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061
|| ||| ||| ||| ||| ||||| | |||||| || || |||| || | |||||
Sbjct 122268 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCGCCCATTTCCACCATGCTT 122209
Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121
|| ||||| || || || || || | || || | | || || | ||| | ||| | |
Sbjct 122208 TCTCCGAATATCGCCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 122149
Query 9122 GCCTCGACGTCGCCATAGA 9140
|| |||| || |||||||
Sbjct 122148 GCGTCGATATCCCCATAGA 122130
>seq646
Length=297705
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998
||||| | ||||| || || || || |||||||||||||| ||||||||| | ||
Sbjct 224503 GTTTTGATGATGTTGAAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGA 224562
Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058
||| |||| ||| | | || ||||||| ||| || || || |||| ||| | |||
Sbjct 224563 GAGTTGATGGGATTCCCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATG 224622
Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118
||||| ||||| |||| ||| || | ||| || | |||| ||||| || | ||
Sbjct 224623 CTCTCTCCGAATATGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCC 224682
Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141
| || || | ||| || |||||
Sbjct 224683 AGGGCGTCAATGTCACCGTAGAG 224705
Score = 91.5 bits (100), Expect = 2e-13
Identities = 165/240 (69%), Gaps = 6/240 (3%)
Strand=Plus/Plus
Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781
||||||| || | ||||| || || | |||||||||| |||| ||| |||||| |
Sbjct 231206 TAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCGCCCT 231265
Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841
| || | || || |||| |||||| || |||||||| |||||||||||||| | | |
Sbjct 231266 TCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTGAGGC 231325
Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCA---CTT 9898
| || || | || |||||||| | || | || | ||| | ||| | || | |||
Sbjct 231326 CTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGCTGCTCAGCAGGGAAACCTT 231385
Query 9899 CGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGT 9958
| || |||| ||| | ||| || ||| | |||||| || ||||| || ||||
Sbjct 231386 CAGG---GTACACCATGTCCACTGGGACCTCAGATATGGTGGGAGGGTACATCTCCCCGT 231442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723565269759200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |