Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2088 127 3e-24 seq1522 107 3e-18 seq646 91.5 2e-13 >seq2088 Length=212312 Score = 127 bits (140), Expect = 3e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || || || || ||||||||||| ||||||||| | Sbjct 147457 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 147398 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| | Sbjct 147397 GGCGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 147338 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || || ||||| || || || || || || | | ||| | |||||| Sbjct 147337 ATCGTCTCCCCAAAAATGGCGTTCGGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGC 147278 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| |||||||| || || || |||||| ||| || || || || || ||| Sbjct 147277 TCCACAGCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCT 147218 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | ||| || |||||||| ||||| ||||| || | | || Sbjct 144936 TCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGAGTG 144877 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || |||||||| || ||| | ||||||||||| ||||| ||||| || |||||| Sbjct 144876 TAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAAGTA 144817 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537 || |||||||||||||| | ||| | |||| Sbjct 144816 GGAGGACTGTCAATCATATGGGATCGTGCTA 144786 >seq1522 Length=231901 Score = 107 bits (118), Expect = 3e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 ||||||||||| || || || | || ||||| |||||||| |||||||| | |||||| Sbjct 122328 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 122269 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || ||| ||| ||| ||| ||||| | |||||| || || |||| || | ||||| Sbjct 122268 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCGCCCATTTCCACCATGCTT 122209 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || ||||| || || || || || | || || | | || || | ||| | ||| | | Sbjct 122208 TCTCCGAATATCGCCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 122149 Query 9122 GCCTCGACGTCGCCATAGA 9140 || |||| || ||||||| Sbjct 122148 GCGTCGATATCCCCATAGA 122130 >seq646 Length=297705 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| | ||||| || || || || |||||||||||||| ||||||||| | || Sbjct 224503 GTTTTGATGATGTTGAAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGA 224562 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||| |||| ||| | | || ||||||| ||| || || || |||| ||| | ||| Sbjct 224563 GAGTTGATGGGATTCCCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATG 224622 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 ||||| ||||| |||| ||| || | ||| || | |||| ||||| || | || Sbjct 224623 CTCTCTCCGAATATGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCC 224682 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | || || | ||| || ||||| Sbjct 224683 AGGGCGTCAATGTCACCGTAGAG 224705 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||||||| || | ||||| || || | |||||||||| |||| ||| |||||| | Sbjct 231206 TAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCGCCCT 231265 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | || || |||| |||||| || |||||||| |||||||||||||| | | | Sbjct 231266 TCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTGAGGC 231325 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCA---CTT 9898 | || || | || |||||||| | || | || | ||| | ||| | || | ||| Sbjct 231326 CTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGCTGCTCAGCAGGGAAACCTT 231385 Query 9899 CGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGT 9958 | || |||| ||| | ||| || ||| | |||||| || ||||| || |||| Sbjct 231386 CAGG---GTACACCATGTCCACTGGGACCTCAGATATGGTGGGAGGGTACATCTCCCCGT 231442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723565269759200