Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq86 143 3e-29 seq4 96.9 4e-15 seq577 95.1 1e-14 >seq86 Length=659436 Score = 143 bits (158), Expect = 3e-29 Identities = 880/1388 (63%), Gaps = 38/1388 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 245700 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 245641 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | || || ||| Sbjct 245640 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 245581 Query 116023 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 || || | |||||| | || | | |||| | |||||||| || ||||| Sbjct 245580 TTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTC---TCCCACATGTCGTACTGG 245524 Query 116080 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 ||||| || | |||| ||||| ||||| ||||||| || ||||| | | | Sbjct 245523 AGGATGCCCTTACTGACG--GGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCTGCGG 245466 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | |||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 245465 CGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA 245406 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGAC 116257 || ||| ||| | || |||| | || || || || |||| || |||| Sbjct 245405 GCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGAC 245346 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACG 116316 | ||||| |||| || || || | || | | | || ||| | ||| || || Sbjct 245345 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCG-GCTTCGGGGACC 245287 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 245286 GGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAG 245227 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 ||||| | | | || ||| | || |||| |||| ||| | |||||||| Sbjct 245226 GCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGATG 245170 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || ||||| || || || | ||| ||||| |||||||| | | || || || Sbjct 245169 GAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAG 245110 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 | || | || |||||||||| ||||| || || ||| |||| || || ||| Sbjct 245109 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 245050 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACA 116616 ||||||||||| || |||||||| || || || ||||||| || || || | ||| | Sbjct 245049 TTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGC 244990 Query 116617 T-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 | | ||| || || | || | | ||| |||| ||| || | |||||||| Sbjct 244989 TGCTGCGCCTTCACCACCCTC-TTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTT 244931 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| ||||| || ||| |||| ||| ||||| || || ||||| | | | Sbjct 244930 CTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCAAGG 244872 Query 116735 ACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 |||| | || | ||| || | ||||||||| ||||| |||||||| | || | Sbjct 244871 ACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTA 244814 Query 116793 GAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 116851 ||| || || | | | ||| || | | || || || || ||||| |||| Sbjct 244813 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGT 244755 Query 116852 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGA 116907 | | | || |||||||||||||||||||| |||| | ||| || | | Sbjct 244754 CGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG- 244696 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| || || | ||||| ||| | || | ||||| || | | || Sbjct 244695 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 244636 Query 116968 TCAGATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTG 117026 | || | ||| || || || ||| | | || | || || | | Sbjct 244635 TTGGAGTTGCCGTTGGTGCCAGCGATGTAGCTTCCCGTCGA-TCGGATGCAGCTCACCGC 244577 Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 || || || || || || |||| || || | ||||||| | | || || ||||||| Sbjct 244576 CACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGAT 244517 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146 || ||||| ||| |||| | | || ||||||||||| |||| || |||| || Sbjct 244516 GCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCC--GG 244459 Query 117147 T--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTT 117203 | || || |||||||||||||| || | |||||| ||||| || | | |||| Sbjct 244458 TTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAG 244400 Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 | ||||||||| | | ||| | |||||| |||||| || || | || |||| ||| Sbjct 244399 GTTGTAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCAT 244340 Query 117264 AAACATGT 117271 | ||||| Sbjct 244339 GAGCATGT 244332 >seq4 Length=1291530 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||||| || ||| || || ||||||||||| || | ||||| Sbjct 279436 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 279495 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||| | || ||| |||||||| |||||||| ||||||||||| ||||| | Sbjct 279496 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 279555 Query 127659 CAAATAGACGCTC 127671 | | |||||||| Sbjct 279556 CCACAAGACGCTC 279568 >seq577 Length=410616 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | ||||||||||||||| ||| ||||| ||||| Sbjct 150344 TAGATGTTGCTTGTGTACGCCTCAATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 150403 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| || || ||||| Sbjct 150404 GCTGTGGGCATCGGGGCCAAAAGCAGACTGTT 150435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613369252906080