Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq86 197 2e-45 seq577 93.3 7e-14 >seq86 Length=659436 Score = 197 bits (218), Expect = 2e-45 Identities = 586/891 (66%), Gaps = 26/891 (3%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| | ||| ||||| | ||| | ||| || | |||| | ||||||||| Sbjct 245128 CTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCT 245069 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| | ||| || | ||||||||| | |||| | ||| | ||| | || |||| || || Sbjct 245068 CTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTC 245009 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || || | ||| | | | |||| |||| |||||| | |||||| Sbjct 245008 GATGA-TGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCAC---CCTCCCTTCCT 244953 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 ||| ||| | ||||| ||| | | || || || | || |||||| |||| | Sbjct 244952 TCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA---GCCCGG 244896 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | |||||||||||| ||||| ||| | | | ||| |||| ||| |||| Sbjct 244895 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 244836 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 |||| |||||||| | |||| || || || | ||| || | || | ||| || Sbjct 244835 GGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 244776 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| |||| ||||| ||| || | | |||| ||||||||| || | ||| ||| Sbjct 244775 TCTTCTTCAGCTCCAG-GAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCG 244717 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || |||||||| || |||||||| || ||||| | | |||| ||||| Sbjct 244716 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACT 244657 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 | ||||||||| |||| ||||||| | | ||||| |||| |||| ||| | | Sbjct 244656 CTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCAGCGATG---TAGCTTCCC 244600 Query 205415 GCCCTCACGTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCG 205471 | | | || || | ||| |||| |||||||||| |||||| || | ||| Sbjct 244599 GTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCG 244540 Query 205472 CACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531 |||| | ||| ||| |||||||||| ||||| |||||| || || | ||| || Sbjct 244539 CACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAG 244480 Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 || | ||||| | |||||| || |||| |||||| || || ||||||| || Sbjct 244479 CAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTG 244420 Query 205592 AAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCA--GCACGCTCTCCAGATCGAAGCCGT 205649 || | |||||| || |||||||||| | ||| || || | || |||| Sbjct 244419 AACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCA-GC-GTCGATGTCTCGCCCGT 244362 Query 205650 GAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCA 205709 | || || | | | |||||||| | ||| || || | ||| ||| || |||| | Sbjct 244361 GGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGA 244302 Query 205710 CCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 ||| ||||| |||| | ||| || || || | || |||||| ||| Sbjct 244301 TCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAAGAAGTTGTAGG 244251 Score = 181 bits (200), Expect = 2e-40 Identities = 355/516 (69%), Gaps = 13/516 (3%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| || ||||| | || || ||||||| ||||| ||| Sbjct 245828 CCTGAATGGATCCGTTGTTTGCAATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGC 245769 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| ||| | ||||| ||||||| |||||| || |||||||||||||||| Sbjct 245768 GCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCC 245709 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | |||| | |||||||||||| | ||||| | Sbjct 245708 TGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 245649 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| |||||||||||||| ||||| |||||| ||| | ||| |||| ||| || Sbjct 245648 CGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGA 245589 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCACTGGGT-TTCACGCCCCACATGT 204395 | | |||||| ||||||| || ||| | | || ||| ||||||||| Sbjct 245588 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTC---TCCCACATGT 245532 Query 204396 CGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCC 204454 || |||| | |||||| | |||||| || ||||| ||| ||| || ||| || | Sbjct 245531 CGTACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGA-GC 245473 Query 204455 TCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGA 204514 ||| | || || | ||| ||| ||| |||| | ||| |||||||| |||||||| Sbjct 245472 TCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGG 245413 Query 204515 ACGTTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGT 204572 | ||| | | ||| ||| || | | || |||| | | || || | || | | Sbjct 245412 ATGTTGAGCAGCTG--GGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCAT 245355 Query 204573 CCGCCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 | |||| ||||| || ||||| || | ||| |||| Sbjct 245354 CGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 245319 Score = 96.9 bits (106), Expect = 6e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | |||||| | ||| || || || |||| Sbjct 246096 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGT 246037 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | |||||||| |||||||| ||||||||| ||||| || || ||||| ||||| | | Sbjct 246036 GGATGTTCAGCGACTGGCTCTGGTCGATG-AAGGCTCCACGGTCTGCCGCCATCCTCAGC 245978 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||||||| || || ||||| || || || Sbjct 245977 ACGGTCTTCTGGGAGATTTCCCAAACGGTTTT 245946 >seq577 Length=410616 Score = 93.3 bits (102), Expect = 7e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | ||||||| ||| || || || |||||||| Sbjct 149106 CTTCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAAT 149165 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 |||||||||||| || || |||||| ||| ||| |||||||| ||||| || | | || Sbjct 149166 GTTCAGAGACTGACTCTGATCGATG-TAGGTGCCACGATCTGCTGCCATCTTCAGGACGG 149224 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || || ||||| || || || Sbjct 149225 TTTTCTGGGAGATTTCCCAAACTGTTTT 149252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794976409353280