Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq722 147 5e-30 seq2100 125 2e-23 >seq722 Length=280156 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| |||||||| | || || | |||||| Sbjct 192165 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTGCGGCCATCT 192106 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| || | ||||||||| ||| ||| |||||| ||| Sbjct 192105 TCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 192046 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||||||| || | ||| || | | || || |||| ||||| ||| Sbjct 192045 TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 191986 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| ||||| || Sbjct 191985 TTCCCAGTGAGGGTTTTCACGAAAATCTG 191957 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||| ||||| | || || | |||||| Sbjct 192393 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCT 192334 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| || | ||||||||| ||| ||| ||||| ||| Sbjct 192333 TCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATCC 192274 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||||||| || | ||| || | | || || |||| ||||| ||| Sbjct 192273 TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTC 192214 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| ||||| || Sbjct 192213 TTCCCAGTGAGGGTTTTCACGAAAATCTG 192185 >seq2100 Length=111253 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||||| || || | |||||| Sbjct 23403 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 23462 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | |||||| || || || || || ||| Sbjct 23463 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATCC 23522 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || |||| ||||| ||| Sbjct 23523 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 23582 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 23583 TTGCCGGTGAGGGTCTTGACGAAGATCTG 23611 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || || || ||||||| ||||||||||| | || | |||||| Sbjct 27365 AGAACAAGGTGGAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 27424 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || || || ||| Sbjct 27425 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 27484 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || |||| ||||| || Sbjct 27485 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTT 27544 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 27545 TTGCCGGTGAGGGTCTTGACGAAGATCTG 27573 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || || || || |||| ||||||||| | || || | |||||| Sbjct 27593 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 27652 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || || || ||| Sbjct 27653 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 27712 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 27713 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 27772 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||||||||| || || Sbjct 27773 TTGCCGGTGAGGGTTTTCACAAAGATCTG 27801 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || || || ||||||| |||||||||| || || | |||||| Sbjct 23631 AGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 23690 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||||||| || ||||| || | ||||||||| || || || || ||| Sbjct 23691 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 23750 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| || | |||||| | | || || |||| ||||| || Sbjct 23751 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTT 23810 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 23811 TTGCCGGTGAGGGTCTTGACAAAGATCTG 23839 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || || || || |||| ||||||||||| | || | ||||| Sbjct 23175 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCC 23234 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| || || || || ||| Sbjct 23235 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 23294 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| || | |||||| | | ||| || |||| ||||| || Sbjct 23295 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTT 23354 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 23355 TTGCCAGTGAGGGTCTTGACGAAGATCTG 23383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178649892465196