Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2100 132 5e-26 seq990 129 6e-25 seq722 120 3e-22 seq4 96.9 3e-15 >seq2100 Length=111253 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||||||||||||| | || || || ||| | Sbjct 23386 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 23327 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| || || ||||| || ||| | ||||| Sbjct 23326 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 23268 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 23267 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTACAA 23208 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| || ||| | || || || | || || ||| |||| || |||| Sbjct 23207 CATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCC 23158 Score = 129 bits (142), Expect = 6e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||||||||||||| | || || ||| | Sbjct 23846 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCC 23787 Query 38300 CACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | || |||| | || | ||||||| || || ||||| || ||| | | Sbjct 23786 CAGCGACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTG 23728 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || || || |||||||| || | |||||||| |||| Sbjct 23727 ACCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 23668 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| |||||||| ||| | || || || | || || ||| |||| || ||| Sbjct 23667 ACAATATCCAAAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGC 23615 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||||||||||||| | || || ||| ||| Sbjct 27576 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTTGAGCCCAGT 27517 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || ||| | ||||| Sbjct 27516 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 27458 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| || | |||||||| |||||||| Sbjct 27457 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 27398 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||||| ||| | || || || | || || ||| |||| || |||| Sbjct 27397 CATCCAAAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCC 27348 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| ||||| ||||||||||||||| | || || ||| || Sbjct 27807 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCC 27748 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | |||| | || |||| || || ||||| || ||| | ||| Sbjct 27747 AGTGACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 27688 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || || || |||||||| || | |||||||| ||||||| Sbjct 27687 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 27628 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || ||| | || || || |||| || ||| | || || ||| Sbjct 27627 AACATCCAGAAAGAATCCACACTCCACCTGGTCCTCCGTCTCAGGGGTGGC 27577 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 23614 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 23555 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || ||| | || || Sbjct 23554 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGATCA 23496 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| || | |||||||| |||||||| Sbjct 23495 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 23436 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| || ||| | || || ||| Sbjct 23435 CATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGGC 23387 >seq990 Length=431866 Score = 129 bits (142), Expect = 6e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 237869 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 237810 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||||| ||| |||| | |||||||| || ||| ||||||||||||||| Sbjct 237809 AAGTAGCGCTCGTCGTCCTTCAGGGACTCCCAGTGCTGCAGGTCTTTGGACAGGTCCACC 237750 Query 133399 T 133399 | Sbjct 237749 T 237749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||||||||||||||| || | ||||| || ||||| | ||||||||||||||| || Sbjct 238063 GTAGGTGTCGATGAGCAGGCTG--TACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 238006 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||||| || |||| ||||| ||||||||| || || | ||| ||||| ||| Sbjct 238005 AAGCCGTAGAAACACCTGGCCTCTGTCACCTGCACCTCCTGCGTGAAGCGCTCCACC 237949 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 ||||| ||||||||||| || | ||| ||||| ||||| | || || ||||| || ||| Sbjct 238449 ATGAGCTCGTTGCTGAAGGTTAGGCCAGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 238390 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 |||||||| || || ||||||| ||||| || || || || ||||||| Sbjct 238389 GCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCAAAGGCCACCA 238338 >seq722 Length=280156 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||| ||||| || || ||||||||| | || || ||| | Sbjct 191950 AAAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCC 192009 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || || | | | | |||| | || | ||| || | || ||||| || ||||| | | Sbjct 192010 CAGTGATACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTG 192068 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || || ||||||||||| || | |||||||| |||| Sbjct 192069 ACCAGCAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACT 192128 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| ||||| ||||| | || || || ||||||| || |||| || ||| Sbjct 192129 ACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGGC 192181 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| || || || |||||| | || || ||| ||| Sbjct 192182 ATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGGAGCCCAGT 192241 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| || | || ||||| | ||||| | ||||| Sbjct 192242 GATACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGACATTCCTCCTGACCA 192300 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | |||||||| ||||| || Sbjct 192301 GCAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTAAAA 192360 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| | || || || ||||||| Sbjct 192361 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 192393 >seq4 Length=1291530 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||| ||||||||||||| | | || | ||| ||||||||||| | || | Sbjct 279436 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 279495 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| | || || ||||| ||| || ||||| | ||||| || || ||||||| Sbjct 279496 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 279555 Query 133037 CCACCAGGCGCTCGCC 133052 |||| || ||||| || Sbjct 279556 CCACAAGACGCTCCCC 279571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500060336145920