Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq197 221 9e-52 seq1664 96.9 3e-14 >seq197 Length=465015 Score = 221 bits (244), Expect = 9e-52 Identities = 936/1469 (64%), Gaps = 16/1469 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| ||| |||| | ||| || || || || ||||| || | |||||| || |||||||| Sbjct 200136 TTTGTCAACGGCGGACACGTTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCAAT 200195 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 200196 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCAGAGAGCTCAAACTTCCCCAGGAGATT 200255 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || ||||||||| ||| || || ||| | | || || Sbjct 200256 GTTGTCCTTTGTCATGGCTCTCTCACCCTCGTAAACCTGAATCAAGACTCCTGGCTGGTT 200315 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | |||| | | | | || || || ||||||| | | Sbjct 200316 ATCTGAGTACGTGGAGAAGA-TCTGAGTCTGCTTCGTGGGGATGGTGGTGTTTCGCTTGA 200374 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 ||| | ||||||| ||||| |||||||| | || || || | |||| ||||| | Sbjct 200375 TAAGAGGTGTCATAACGCCACCGGCTGTTTCAATGCCCAGCGACAAGGGAGCCACATCCA 200434 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | ||||| || | ||| | || ||||| ||||| | | Sbjct 200435 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCTTGGACGG 200494 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| || || || |||||||| || | | | ||||| | | ||||||||| Sbjct 200495 CTGCACCATAGGCCACCGCCTCATCAGGGTTGATGCTCTTGTTTAGCTCTCTACCATTGA 200554 Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 200555 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 200614 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 200615 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 200674 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | | || || | ||| || || || ||||| || || || || ||| | Sbjct 200675 GTGTTCCCCTGAAGAGGTCCGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 200732 Query 517848 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 || || ||||| || || || | ||||||| ||||| | | ||||| || || Sbjct 200733 GTAAAAGTCAATGCCCTCAAAGAGTGAATCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 200792 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTG 517961 | | | || || | || || ||||| | ||||| | | ||| | | ||| Sbjct 200793 CAAGGTCCTCTTTGCTCTCTCGCAAGCTGTGCGCAGTCTCCTCACCGCTCTCTTGTTCTG 200852 Query 517962 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 518021 |||| || | || | ||||| || || || || ||| | | || | | Sbjct 200853 GCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTC 200908 Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 | || |||||||| || || || | | || | || | || ||| | || | || | Sbjct 200909 GGTTGTCAAAATCCTCCCCACCAAGGTGTGTGTCCCCGGCTGTGGCTTTCACCTCAAATA 200968 Query 518082 GTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAA 518141 || || |||| | || | | || ||| || || ||||| | |||||| || | Sbjct 200969 TGCCGTCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGA 201028 Query 518142 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 | | || ||| || | ||| ||||| || || |||| || || || || | Sbjct 201029 GGATGTTGCGCTCTCCTCTTTTGCCTTTGTCAAGGCCGTAGGCAATGGCTGCCGCTGTGG 201088 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| || || | | |||||| || || | || ||| ||||| || ||||||| Sbjct 201089 GCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTT 201148 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTA 518320 | ||||| ||||| ||||| || || || || || || || |||| | || ||| | Sbjct 201149 GCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTC 201208 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 ||| | | || || ||| | |||||||| | | ||| || ||||| | ||| Sbjct 201209 CCAGAA-AGGCCTCGGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATCTCTTCA 201267 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 || | || ||| ||| || |||| || | | | || || | Sbjct 201268 GGACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTCG 201327 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 || || || || || |||||| |||||| || || || || |||||| ||| | Sbjct 201328 TTGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTT 201387 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 || ||||| | ||||| |||||||| || || ||||| || || || ||| |||| | Sbjct 201388 CTTCCAATGAGCCGTTTGGCATCAAAGATTGTGTTGGTGGGGTTCATGGCAACTTGGTTC 201447 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||| |||||||| || || ||||| || ||||| | || || |||||||| Sbjct 201448 TTGGCAGCATCTCCGATGAGCCTCTCTGTGTCAGTAAAGGCCACGTAGCTGGGAGTTGTC 201507 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | || ||||||||||| ||||||||||| ||||| |||| || | || || |||||| Sbjct 201508 CTGTTGCCTTGATCATTGGCAATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAA 201567 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | || || || | ||| || ||||| Sbjct 201568 GAGTAGGTGGTGCCCAGATCGATGCCAAT 201596 >seq1664 Length=147169 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || || ||| | |||| |||||||| ||||||||||| Sbjct 19438 CAAAAACTGTGTTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCGTCTCCAATCAGTC 19379 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 19378 TCTCGGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 19319 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| ||||| | || ||||| | ||| | Sbjct 19318 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTTCCAAGATCGA 19259 Query 518703 TACCAA 518708 | |||| Sbjct 19258 TTCCAA 19253 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || ||||| |||| |||||| |||||||||||||| || || | ||||||| Sbjct 20072 TTCTTGTCCAGCCCATAGGCAATAGCAGCTGCAGTTGGTTCATTGATTATACGCAAAACA 20013 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| || | || ||||| || ||||| || | || || || || || || Sbjct 20012 TTGAGGCCAGAGATGGTGCCAGCATCCTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 19953 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || || || |||| Sbjct 19952 GCAGGTACTGTGATCACAGCAT 19931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779929776187528