Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq86 138 1e-27 seq577 96.9 4e-15 seq4 87.8 2e-12 >seq86 Length=659436 Score = 138 bits (152), Expect = 1e-27 Identities = 521/808 (64%), Gaps = 11/808 (1%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || || | | || || |||| ||| || |||||| Sbjct 245794 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 245735 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | || || | |||||||| | ||||| | || | Sbjct 245734 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 245675 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 245674 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 245615 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 245614 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 245555 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137 | | || || || ||||||| || | || || | ||||| |||| | ||| || Sbjct 245554 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTACTGACGGGCGAG--CC 245498 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 ||| ||||||| |||| || | || | || | ||| ||||| |||||||||| || Sbjct 245497 CTCGTATGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGC 245438 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || ||||| || ||||| | || | | || |||||| || || | Sbjct 245437 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGG 245378 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 | || || || || |||| || ||||| || || || | || || || ||||| Sbjct 245377 ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTG 245318 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 ||| | || ||| | | || || || || || | || |||| |||| || Sbjct 245317 GCGCTTGTTGGACGT-CTCGGCTTCGGGGACCGGGTAGTAGTTGATGTCGATGATCTTGT 245259 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 106436 | || ||||| | | ||| |||| || || | | || ||||| || Sbjct 245258 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG-- 245201 Query 106437 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 106496 |||| |||| ||| | |||||||| || |||| ||||| || ||| ||| | Sbjct 245200 -CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 245142 Query 106497 CCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556 |||| |||||||| | | ||||| || | |||| | || || || |||| | Sbjct 245141 CCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGT 245082 Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 106616 ||| ||||| ||||| ||||||| || |||||||||||||||||||||||||| || | Sbjct 245081 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTT 245022 Query 106617 CCGTCTGTGACTTGAGAATTGCCTTCCA 106644 | ||||| |||| || || || | ||| Sbjct 245021 CGGTCTGGGACTCGATGATGGCGTACCA 244994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || ||||| |||| || || |||| |||| | | || || | ||||| || Sbjct 244572 CCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCT 244513 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--G 107180 | ||| ||| ||||| ||| || |||||||| ||||||| |||||| | ||| | Sbjct 244512 TCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCC--GGTTGG 244455 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239 | || || ||||||||||| || | ||||| ||||| || | | |||| || | Sbjct 244454 TCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTG 244396 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || ||||| | | ||| || |||||| ||||||||| || | | ||| | ||| | | Sbjct 244395 TAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 244336 Query 107300 ATGT 107303 |||| Sbjct 244335 ATGT 244332 >seq577 Length=410616 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| |||||| || | || ||||| || | ||| ||| || || || Sbjct 151929 CTCATCTTTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 151988 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | ||||| |||| ||||||| || ||||||||||||||||| ||||| || Sbjct 151989 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 152048 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||| ||||| |||| || || || | ||| Sbjct 152049 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 152081 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 |||| ||||| || |||||||||| |||| ||| |||||||||||||| || || Sbjct 150790 GCCAGCTCACAACTGGCCTCCAGGGCGGCGTAATAGATGGTTTCAAAGATGTGAATGTTG 150849 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 106288 | || ||| || ||||||| |||||| | ||||| |||| || ||| Sbjct 150850 AGTAACTGGGCCTCTGGGCTTTCAAATGGGTAGCGCATGAGGATAAAGGCATCAGCCAGA 150909 Query 106289 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 106333 || || ||||| | |||||||| ||||| ||| | || |||||| Sbjct 150910 CCCTGCACACCGATTCCAATAGGCCTGTGACGCTTGTTGGACTTT 150954 >seq4 Length=1291530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || | | ||| ||||| || ||| || |||||||||||||| || | ||||| Sbjct 279436 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 279495 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||| ||| || ||||| |||||| || |||||||| || |||||||| || || | Sbjct 279496 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 279555 Query 117413 CAAAAAGGCGCTC 117425 | | ||| ||||| Sbjct 279556 CCACAAGACGCTC 279568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589848142817120