Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq722 145 2e-29 seq2100 127 5e-24 >seq722 Length=280156 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || |||||||| || | || || | |||||||| Sbjct 192162 ACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTGCGGCCATCTTCC 192103 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| || ||||| || | || ||||| ||||||||||||||||| || ||| Sbjct 192102 AGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGA 192043 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| |||||||||||||| || ||| ||||| || ||||| | ||| Sbjct 192042 ATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTC 191986 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | ||||| Sbjct 191985 TTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 191954 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || || || || | || || | |||||||| Sbjct 192390 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCTTCC 192331 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| || ||||| || | || ||||| ||||||||| ||||||| || ||| Sbjct 192330 AGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATCCTGA 192271 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| |||||||||||||| || ||| ||||| || ||||| | ||| Sbjct 192270 ATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATAGTC 192214 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | ||||| Sbjct 192213 TTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 192182 >seq2100 Length=111253 Score = 127 bits (140), Expect = 5e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || ||||| |||||||| |||||||| || | || || | |||||||| Sbjct 23633 AACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTC 23692 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || ||||| || || ||||| || || || || Sbjct 23693 CAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 23752 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| ||||||||||||||||||||| Sbjct 23753 GATTTTGGCCTTGACGTTCTCAATGGTGTC 23782 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || || || ||||| || || ||||| || | ||| || | ||||| || Sbjct 23177 AACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTC 23236 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || ||||| || || ||||| || || || || Sbjct 23237 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 23296 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||||||||||||||||||||| |||||| || ||||| | || || Sbjct 23297 GATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTT 23356 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 23357 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 23386 Score = 120 bits (132), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || || || |||||||| || ||||| || | ||| || | |||||||| Sbjct 27367 AACAAGGTGGAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTC 27426 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || ||||| || || ||||| || || || || Sbjct 27427 CAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 27486 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||||||||||||||||||||| ||| || || || ||||| | || Sbjct 27487 GATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGT 27543 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 27544 TTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 27576 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 27596 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 27655 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || ||||| || || || || Sbjct 27656 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 27715 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| ||||| |||||||| | || Sbjct 27716 ATCTTGGCCTTAACATTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATGGTT 27772 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| || || | ||||| Sbjct 27773 TTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 27804 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || || || ||||| || | || || | |||||||| Sbjct 23406 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 23465 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || || ||||| || || || || Sbjct 23466 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGG 23525 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||| || || || ||||| | ||||| Sbjct 23526 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 23585 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 23586 CCGGTGAGGGTCTTGACGAAGATCTGCAT 23614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109225896388796