Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq86 102 9e-17 seq4 82.4 9e-11 >seq86 Length=659436 Score = 102 bits (112), Expect = 9e-17 Identities = 558/885 (63%), Gaps = 8/885 (1%) Strand=Plus/Minus Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 |||||||| || |||| || || || || | |||| || ||||||||||| ||| Sbjct 245100 CATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGC 245041 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 || | || || || ||||| |||| || || ||||| | | ||| | | ||| Sbjct 245040 ATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCC 244981 Query 48075 TTTATAACAGCTCT--AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATT 48132 || | || |||| | | | | || | || ||| | || || | |||||| || | Sbjct 244980 TTCACCACC-CTCTTCACCCTCCCT-TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACT 244923 Query 48133 CATCCCCATA-CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191 | || || | ||| | || | ||| ||||| || | ||||||||||| ||||| ||| Sbjct 244922 CCTCTCCCCAGCAC-TCGTCCAGCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCC 244864 Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA-AAGAGCTATAAATAAATC 48250 | | | | ||||| |||| || | || || ||||| ||| || ||| | || Sbjct 244863 TGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAA-AGGTC 244805 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 || | ||| | || || || || | ||| | || || || || ||||| | | || Sbjct 244804 TCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTC 244745 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 ||||| ||||| | || || || | | || |||| || || || || || || Sbjct 244744 GAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTC 244685 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | || | || || ||||| |||||||| | ||| ||||| | || || || | || Sbjct 244684 GACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCC 244625 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490 ||||| || | || || ||||| | | || || || | | | || || || Sbjct 244624 GTTGGTGCCAGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCC 244565 Query 48491 ACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACT 48550 || || || || || || || ||| | || ||||| || || || ||||| || || Sbjct 244564 GCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 244505 Query 48551 ATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATT 48610 || || |||| | | || || || || |||| ||||| | || || | || Sbjct 244504 GTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTT 244445 Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 || | || ||||| || || | ||||| ||||| || | | || || || || || Sbjct 244444 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGAT 244385 Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 ||| || || || | || || || | || || | ||| | ||| | || || Sbjct 244384 GGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 244325 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 | || | | ||| || || |||| || || || |||| || || ||||| Sbjct 244324 CCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACC 244265 Query 48791 AAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 || ||||||| || || || | |||| ||| || || ||||| Sbjct 244264 GAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGAGGAATT 244220 >seq4 Length=1291530 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | | || || ||||| |||||||| |||||||| || ||||||||||| Sbjct 278164 CATCACTCCGAATCTCTGGTACTCGGCTACTCTTTTCTCAAAGAAGTTTGTTTTTCCCTC 278223 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATATTTTTT 18769 | || || | ||||| || ||||| ||||||| ||||| || | |||| Sbjct 278224 CAGAGAAATGGACTCCATGAAGTCAAAAGGATTTTCCACATTGTAAACCTTTT 278276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561982409836320