Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq197 174 1e-37 seq722 114 1e-19 seq1664 102 7e-16 seq2100 98.7 8e-15 seq277 95.1 1e-13 seq166 91.5 1e-12 >seq197 Length=465015 Score = 174 bits (192), Expect = 1e-37 Identities = 401/594 (68%), Gaps = 14/594 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||| || || | || |||| ||||| Sbjct 201596 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 201537 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||||||||||||||||| ||||| || ||||| || || | || || || Sbjct 201536 GAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACTGAC 201477 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAAT 550171 || || | | || ||||| || || | ||| |||| || || || ||||| Sbjct 201476 ACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCCACCAAC 201420 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| ||||| | ||||||||||| ||| |||| | || ||| | Sbjct 201419 ACAATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCT 201360 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| | ||||| ||| | | | || | ||||| || | | | || | Sbjct 201359 GACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCC-CAAAGTCCAGGT 201301 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||||| |||| ||| | || ||| | ||||| || ||||| | Sbjct 201300 GGAAT-ATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGTCCTGG 201242 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | ||||||| | ||| |||| || ||| | || || || || |||| || || | Sbjct 201241 TTAAAATGAGAGAAATAGCCGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCA 201182 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||||||| || ||| | ||||| || || ||||||||| || Sbjct 201181 CAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCT 201122 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| |||||||| || || || ||||| || || || || || |||| || || | Sbjct 201121 CCGGACTAAATGTTCTCCGCATCATAAATGAGCCCACAGCGGCAGCCATTGCCTACGGCC 201062 Query 550530 TTGATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||| ||| || || || ||| | || | |||||||||||| ||| || Sbjct 201061 TTGACAAAGGCA-AAAGA-GGAGAGCGCAACATCCTCATCTTTGATCTTGGTGG 201010 Score = 170 bits (188), Expect = 2e-36 Identities = 441/667 (66%), Gaps = 10/667 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || |||||||| ||||| || | || || | || || | ||||| | | ||||| | Sbjct 200822 ACAGCTTGCGAGAGAGCAAAGAGGACCT-TGTCCTCCAGCACTCAGGCAAGCATTGAGAT 200764 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 |||||| | |||||||| ||||| | | | || | || | ||||| || || || Sbjct 200763 TGATTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTCGAGGA 200704 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || || ||||| || |||| | || ||||| || | | || |||| | Sbjct 200703 GCTCAACTCGGACCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGC 200644 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | ||||||||||| | || ||| |||| || |||||||| ||||||||||| || Sbjct 200643 TAAGCTGGATAAATCCAAGATCCACGAAGTTGTCCTAGTTGGTGGCTCTACAAGAATCCC 200584 Query 552152 TAAAATTCGCGAAATG----TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG 552207 ||||| | ||| | | || ||| |||||||||| | | |||| | || Sbjct 200583 CAAAAT---CCAAAAGCTCCTGCAGGACTT-CTTCAATGGTAGAGAGCTAAACAAGAGCA 200528 Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 | || || |||||||| || ||||||||||| || | ||||| ||||| || || Sbjct 200527 TCAACCCTGATGAGGCGGTGGCCTATGGTGCAGCCGTCCAAGCTGCTATCCTCATGGGTG 200468 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 | || ||||| | ||| || | | || | ||||| |||| | || || || Sbjct 200467 ACACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCTCCCTTGTCGCTGGGCA 200408 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | ||||||| || || ||||||| ||||||| | |||| || || || || | Sbjct 200407 TTGAAACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCATCCCCACGA 200348 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 | | ||| | || || ||||| |||||||| || | | || ||||| ||| Sbjct 200347 AGCAGACTCAGATCTTCTCCACGTACTCAGATAACCAGCCAGGAGTCTTGATTCAGGTTT 200288 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 || || || ||| | || || || || |||| || || | ||| | | | Sbjct 200287 ACGAGGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTCTG 200228 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 || ||||||||||||| | || || || || ||||||||||| || |||||||| |||| Sbjct 200227 GTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATTGAAGTTACCTTTGATATCGACGCCA 200168 Query 552568 ATGGAAT 552574 | || || Sbjct 200167 ACGGCAT 200161 >seq722 Length=280156 Score = 114 bits (126), Expect = 1e-19 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| || ||||| || || || ||||| ||| | ||| |||||||| || | || Sbjct 192175 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATATTGTAGTCCGACAGG 192118 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || ||||| || ||||| || || || ||||| ||||||||||| Sbjct 192117 GTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATG 192058 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| ||||| ||| || || |||||| |||||| || | | || || Sbjct 192057 CCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTG-GGCTCCACCTC 191999 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || ||||| |||||||| ||||| Sbjct 191998 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 191954 Score = 105 bits (116), Expect = 5e-17 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || ||||| || ||||| || || || ||||| ||||||||||| ||||||| Sbjct 192337 ATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTT 192278 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||| ||||| ||| || || |||||| |||||| || | | || || || || | Sbjct 192277 ATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTG-GGCTCCACCTCCAGGGTGA 192219 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || ||||| || ||||| |||||||| ||||| Sbjct 192218 TAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 192182 >seq1664 Length=147169 Score = 102 bits (112), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| || || || |||||||| || ||||| || || || |||| Sbjct 19931 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 19990 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||| | ||||| ||||||||||| ||||| ||||| Sbjct 19991 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 20050 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 20051 TTGCCTATGGGCTGGACAA 20069 Score = 95.1 bits (104), Expect = 1e-13 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | |||||||| || ||||||||||| | || |||| ||||||||| Sbjct 19255 GGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 19314 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| ||||| ||||| || || || ||||| ||||||| || || Sbjct 19315 ATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACAGATACC 19374 Query 550118 GA-ACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATAC 550173 || | | | | |||| || ||||| || |||| |||| || || |||||||| || Sbjct 19375 GAGAGACTGA-TTGGAGACGCAGCCAAGAATCAGGTTGCCA-TG--AACCCTACCAACAC 19430 Query 550174 TATTTTTG 550181 |||||| Sbjct 19431 AGTTTTTG 19438 Score = 89.7 bits (98), Expect = 4e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| |||||||||||||||||||| || || || ||||| || || |||||||| ||||| Sbjct 21157 AGGAATTCCTCCTGCTCCTCGTGGCGTTCCACAGATTGAGGTGACATTCGATATTGATGC 21216 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 ||||| || ||||||| ||||| ||| ||| Sbjct 21217 TAATGGCATCATGAATGTCTCTGCTGTTGACAAA 21250 >seq2100 Length=111253 Score = 98.7 bits (108), Expect = 8e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| |||||||| ||||| || |||||| |||||| || ||||| |||| || || Sbjct 27355 CCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGGGT 27414 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || ||||||||||| || || || ||||| ||||| || || || Sbjct 27415 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 27474 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 || ||||| || || || || || |||||| || ||| || | | || || Sbjct 27475 CTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAG 27534 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| || || || || || ||||| || ||||| Sbjct 27535 GGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 27576 Score = 87.8 bits (96), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||||||||| || || |||||||| ||| | ||| || ||||| |||| || Sbjct 23393 CCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGG 23450 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || ||||||||||| || || || ||||||||||| || || Sbjct 23451 GTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATG 23510 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 || || ||||| || || || || || |||||| || || || | | || Sbjct 23511 CCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCC 23570 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || || || || || || ||||| || ||||| Sbjct 23571 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 23614 >seq277 Length=640189 Score = 95.1 bits (104), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| || || || |||||||| || || || || || ||||||| Sbjct 208453 ATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 208394 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || |||||||| ||||| || || || || || |||||||| Sbjct 208393 CTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTGCTGCCA 208334 Query 550518 TTGCATATGG 550527 |||| ||||| Sbjct 208333 TTGCTTATGG 208324 >seq166 Length=757612 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||| | Sbjct 653462 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGACG 653403 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || || | || || ||||| ||||| |||||||||||||| || || || || Sbjct 653402 CCGGTACCATCTCCGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCCGCAGCCA 653343 Query 550518 TTGCATATGGACTTG 550532 ||||||| || |||| Sbjct 653342 TTGCATACGG-CTTG 653329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028344713434120