Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq60 145 6e-30 seq4888 105 5e-18 >seq60 Length=641354 Score = 145 bits (160), Expect = 6e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||||| |||||||||| || || |||||||| ||||| || ||||| |||||||| || Sbjct 475684 CATGTCCTTGTACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATC 475625 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| ||||| | ||||||| ||||||| ||||| | ||| |||||||| || Sbjct 475624 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATC 475565 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 475564 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 475517 Score = 132 bits (146), Expect = 4e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 476582 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 476523 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| | || | |||||| |||||||| || ||||| ||||||| Sbjct 476522 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 476463 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGA 30031 ||||| |||||||| | || ||||| || || || ||||||| Sbjct 476462 ACGTAGAACTGACAGAGGGCATGGCAGGGGGGCAGCGCCATGA 476420 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 ||||||||||||||||||||| |||||| || | |||||| ||||| ||| ||||| || Sbjct 476337 CTTTGGGGTTCCAGGCGCACATGATGATCCGTCGGTCTTCCGGGTTTTTCTTGATGGTGT 476278 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCC 30128 | | | |||||| ||||| || || || Sbjct 476277 CGATGATGTTTTGTAGCTGGTCGACACC 476250 >seq4888 Length=17061 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||||||||||||||| | ||| |||||| || |||| || || ||||| || ||||| || Sbjct 10818 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 10877 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||| ||||| || ||||| |||||||| |||| | ||||| Sbjct 10878 GAACCAGGTCTTCCTGCCCATGATCACCACATTCTTCCTGCCT 10920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408528019274324