Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq86 365 8e-96 seq990 105 1e-17 seq577 93.3 8e-14 seq4 84.2 4e-11 >seq86 Length=659436 Score = 365 bits (404), Expect = 8e-96 Identities = 1035/1589 (65%), Gaps = 47/1589 (3%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || | ||| ||| |||||| | ||| ||| || | Sbjct 245791 CATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGAT 245732 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || |||||||| | ||| | ||| ||| ||| |||||| Sbjct 245731 CTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGA 245672 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| || Sbjct 245671 CTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCT 245612 Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCC 221304 ||| | || ||| | | ||| || ||||| |||||||| || Sbjct 245611 GTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA--------- 245561 Query 221305 CAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACT 221364 |||||| ||| || || Sbjct 245560 CAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTACTGACGGGCGA 245501 Query 221365 CCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGG 221423 || ||||| | ||||||||| ||| | | |||| | |||| | || || |||| Sbjct 245500 GCCCTCGTATGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCA-GCTGGCCTCCAGGG 245442 Query 221424 CAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGA 221483 | ||||||||||||||||| |||||| ||||||| || ||| ||||| || Sbjct 245441 CGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGA 245382 Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 | || |||| || ||| | |||||||| ||||| || ||||| ||||| |||| Sbjct 245381 ACGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCC 245322 Query 221544 TGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGAT 221603 |||| | | ||||||| | | ||||| || || || || |||||| |||||| | | Sbjct 245321 TGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAGTTGATGTCGATGATCT 245262 Query 221604 TGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCA 221663 |||||||||| ||| || || || || |||||||| | | ||| Sbjct 245261 TGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA----- 245207 Query 221664 ACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTAC 221723 | || | | | |||| | ||| ||| ||||| | | ||||||||| | Sbjct 245206 AGTCCGCTCTGGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGTTGC 245157 Query 221724 ACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACT 221783 | |||||||||||||||||| |||| |||| | | |||||| |||||||||||||| | Sbjct 245156 AGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATT 245097 Query 221784 TGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAA 221843 ||||||| ||||||| | || || ||| | ||| |||||||||||||||||| Sbjct 245096 TGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGT 245037 Query 221844 AGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTC 221902 |||| || || || ||| | | | | || || |||||| | ||| || || Sbjct 245036 AGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG-CTGCGCCTTC 244978 Query 221903 ACCGTCCTCTTGACTGCACCCTCGGT--CTTTTCATACCCGGTATAGAGCATGTCAAACT 221960 ||| |||||| ||||||| | ||| ||||| | ||| |||||| | || |||| Sbjct 244977 ACCACCCTCTT-----CACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACT 244923 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 || || | ||||||||| || |||||| | ||||||||||| ||||| || Sbjct 244922 CCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCCT 244863 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 |||| | || |||| |||||| |||||||||||||||| || | || || |||| Sbjct 244862 GGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTC 244803 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 ||| | |||||||||| || |||| ||| |||| |||| || || || | ||| Sbjct 244802 TGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGA 244743 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 ||||||||| ||||| || | ||| | || ||||||| ||||||||| ||||| || | Sbjct 244742 AGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGA 244683 Query 222201 CCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGT 222260 | | || |||| | | | || |||| |||| ||||||||| |||| Sbjct 244682 CGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGT 244623 Query 222261 TGGTGCCCTTAATGTACGCACCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACC 222318 ||||||| ||||| || | ||| | || | | || | | || |||||| || Sbjct 244622 TGGTGCCAGCGATGTA-GCTTC-CCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCC 244565 Query 222319 ACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGA 222378 || ||| || || || | ||||| ||| || ||||| |||||| || || Sbjct 244564 GCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 244505 Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||| ||||| | | | ||||| || || |||| ||| | | ||| | |||||| Sbjct 244504 GTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTT 244445 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTAC 222498 || || || ||| |||||| || || | | |||| || | ||| ||||| | Sbjct 244444 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGAT 244385 Query 222499 GACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGG 222558 | | | |||||| |||||| ||| | | |||||| ||||| ||| || Sbjct 244384 GGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 244325 Query 222559 CCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAA 222615 || || |||| ||| | || || |||||||| || |||||||||||||| Sbjct 244324 CCGCTCGGCCAC-TTTCCCGTTGATCT--TCAGCAGGTAGGAGCGCTCCAGAGTCTTGAA 244268 Query 222616 CCCAAAGTAGTTG-AGGTCAAAGTCTCTG 222643 || ||| ||||| ||| ||| |||||| Sbjct 244267 ACCGAAGAAGTTGTAGGAGAAA-TCTCTG 244240 >seq990 Length=431866 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||||||||||||||| ||||| ||| |||||||| || |||||||||| Sbjct 238338 TGGTGGCCTTTGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCT 238397 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || ||||| || || ||| ||||||||||||||| | | Sbjct 238398 GGCTGAAGAAGAGAGGCCTGATGCCTGGCCTAACCTTCAGCAACGAGCTCATCAGTCGAG 238457 Query 26003 ACGAGG 26008 |||||| Sbjct 238458 ACGAGG 238463 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 239242 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 239301 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 239302 CGGGTCGGGGAGTACCA 239318 >seq577 Length=410616 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||| |||||||| || ||||||| || || || ||||||| | |||||| || Sbjct 152404 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 152463 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 || |||| ||| |||| |||||||||||||| | |||||| |||||||||||||| Sbjct 152464 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 152523 Query 222157 ATAGAC 222162 || || Sbjct 152524 GTACAC 152529 >seq4 Length=1291530 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| || || || || || || |||||||| || || ||| || || || || Sbjct 279571 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCT 279512 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| || |||||| || || || |||||||| ||| Sbjct 279511 GCTATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTC 279452 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||||||||||| Sbjct 279451 ATTAGCAGGGACGAGG 279436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928635949246720