Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq197 165 5e-35 seq277 96.9 2e-14 seq1664 95.1 8e-14 seq166 89.7 3e-12 seq666 87.8 1e-11 seq2100 86.0 4e-11 >seq197 Length=465015 Score = 165 bits (182), Expect = 5e-35 Identities = 371/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| || ||| | || || || ||| |||||| | || | || ||| Sbjct 201604 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 201545 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| ||||||||||| ||||| || || ||||| || || || | | Sbjct 201544 GAAAAGTGGAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 201485 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || || || || ||||||||||| || | |||| ||| || || Sbjct 201484 TTACTGACACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 201425 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | | |||||||| |||| Sbjct 201424 CCAACACAATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 201365 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621 | ||||| ||| | ||||| || |||||||| || | || || || | | Sbjct 201364 AGTCTGACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 201305 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||| | ||| |||| ||| ||| | || ||| | ||||| || ||||| Sbjct 201304 AGGTGGAATATA--AAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGT 201247 Query 474682 TTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | ||||||| | ||| | |||| | | ||| ||||| || | |||| | Sbjct 201246 CCTGGTTAAAATGAGAGAAATAGCCGAG-GCCTTTCTGGGACAGAGGGTGTCGAATGCGG 201188 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| || ||||||||||| ||| | ||||| || || ||||| ||| Sbjct 201187 TCATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAG 201128 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || || |||||| | || || || ||||| || ||||| || || |||| | Sbjct 201127 TGATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCCACAGCGGCAGCCATTGCCT 201068 Query 474861 ATGGTCTTGATAA 474873 | || ||||| || Sbjct 201067 ACGGCCTTGACAA 201055 >seq277 Length=640189 Score = 96.9 bits (106), Expect = 2e-14 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 474729 TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTA 474788 |||| |||| || | ||||| || || || || ||||| ||||| || || || || | Sbjct 208459 TAACAAATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCA 208400 Query 474789 AAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAG 474848 ||||||| || | ||| | || || |||||| | ||||| ||||| || |||||||| | Sbjct 208399 AAGATGCTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTG 208340 Query 474849 CCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || ||||||||||| | || || || Sbjct 208339 CTGCCATTGCTTATGGTTTGGACAAAAA 208312 >seq1664 Length=147169 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || || || || ||||| || || ||||| || || || |||| Sbjct 19931 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 19990 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | || | || || |||||||| ||||| || ||||||||||| ||||| || Sbjct 19991 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 20050 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| || || ||||| Sbjct 20051 TTGCCTATGGGCTGGACAAGAA 20072 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| || ||| | ||||| || ||| ||||| | ||| | || |||| ||| Sbjct 19249 GCAGTTGGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAA 19308 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||||||||| || || || ||||| ||||| |||| || Sbjct 19309 GTTGAAATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACA 19368 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || || || || |||||||| || || || |||| | ||| Sbjct 19369 GATACCGAGAGACTGATTGGAGACGCAGCCAAGAATCAGGTTGC 19412 >seq166 Length=757612 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || || ||||| ||||| | | | | || |||| ||| Sbjct 654130 GCAGTAGGCATTGATCTGGGCACCACTTATTCATGTGTGGGTATCTTCCAGCATGGCAAA 654071 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || ||||| || ||| ||||| | || ||| Sbjct 654070 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACCCCAAGCTATGTGGCCTTCACT 654011 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || ||||||||||||||||| || Sbjct 654010 GACACAGAGAGGCTTATTGGAGATGCTGCCAA 653979 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAA- 476089 ||||| |||||| | || |||||||| || | ||||| || ||| ||| ||| Sbjct 651225 GAAGGGGAAAGAGCCATGACCAAAGATAACAATAT-CTTGGGGAAATTTGAAT--TGACT 651169 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| || ||||||||||||||||| ||||| || || || || ||||| |||||||| Sbjct 651168 GGTATCCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATTGATGCC 651109 Query 476150 AATGGTATTCTTAATGT 476166 || || ||||| || || Sbjct 651108 AACGGCATTCTCAACGT 651092 >seq666 Length=293398 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || |||||||||||||| ||||| | | || || |||||||| | || || Sbjct 75154 GTGGAGATTATTGCCAATGACCAGGGTAACCGCATCACCCCCTCATATGTGGCCTTCACC 75213 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 ||| ||| | ||| ||||| ||||||||||| ||| ||||| | ||||| |||| Sbjct 75214 AGTGAGGGTGAGCGTCTCATTGGTGATGCTGCTAAGAATC-AGCTGACCTCTAACCCTGA 75272 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || || | |||||||| || || |||||||||| Sbjct 75273 GAACACAGTCTTTGATGCCAAGAGGCTGATTGGTCG 75308 >seq2100 Length=111253 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| ||||| || || || |||||| | ||| || |||| || || | | Sbjct 23625 AGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGG 23684 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || |||||||||||||| || || | || || ||||| || || || ||| Sbjct 23685 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 23744 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 || || || || || ||||| ||||| || || || | || ||||| Sbjct 23745 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 23804 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| |||||||| ||||| || || || || Sbjct 23805 ATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTG 23839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267407607402224