Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13]
17,988 sequences; 815,144,743 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq197 165 5e-35
seq277 96.9 2e-14
seq1664 95.1 8e-14
seq166 89.7 3e-12
seq666 87.8 1e-11
seq2100 86.0 4e-11
>seq197
Length=465015
Score = 165 bits (182), Expect = 5e-35
Identities = 371/553 (67%), Gaps = 6/553 (1%)
Strand=Plus/Minus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383
|||| | ||||| || ||| | || || || ||| |||||| | || | || |||
Sbjct 201604 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 201545
Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443
| ||||| ||||| ||||||||||| ||||| || || ||||| || || || | |
Sbjct 201544 GAAAAGTGGAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 201485
Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503
||||||| || || || || ||||||||||| || | |||| ||| || ||
Sbjct 201484 TTACTGACACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 201425
Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563
|| || || |||||||| ||| | | ||||| | | |||||||| ||||
Sbjct 201424 CCAACACAATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 201365
Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621
| ||||| ||| | ||||| || |||||||| || | || || || | |
Sbjct 201364 AGTCTGACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 201305
Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681
|| | |||| | ||| |||| ||| ||| | || ||| | ||||| || |||||
Sbjct 201304 AGGTGGAATATA--AAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGT 201247
Query 474682 TTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740
| | ||||||| | ||| | |||| | | ||| ||||| || | |||| |
Sbjct 201246 CCTGGTTAAAATGAGAGAAATAGCCGAG-GCCTTTCTGGGACAGAGGGTGTCGAATGCGG 201188
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| || || || ||||| || ||||||||||| ||| | ||||| || || ||||| |||
Sbjct 201187 TCATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAG 201128
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
|| | || || |||||| | || || || ||||| || ||||| || || |||| |
Sbjct 201127 TGATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCCACAGCGGCAGCCATTGCCT 201068
Query 474861 ATGGTCTTGATAA 474873
| || ||||| ||
Sbjct 201067 ACGGCCTTGACAA 201055
>seq277
Length=640189
Score = 96.9 bits (106), Expect = 2e-14
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 474729 TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTA 474788
|||| |||| || | ||||| || || || || ||||| ||||| || || || || |
Sbjct 208459 TAACAAATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCA 208400
Query 474789 AAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAG 474848
||||||| || | ||| | || || |||||| | ||||| ||||| || |||||||| |
Sbjct 208399 AAGATGCTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTG 208340
Query 474849 CCGCACTTGCTTATGGTCTTGATAAGAA 474876
| || ||||||||||| | || || ||
Sbjct 208339 CTGCCATTGCTTATGGTTTGGACAAAAA 208312
>seq1664
Length=147169
Score = 95.1 bits (104), Expect = 8e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || || || || || || || || ||||| || || ||||| || || || ||||
Sbjct 19931 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 19990
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || | || | || || |||||||| ||||| || ||||||||||| ||||| ||
Sbjct 19991 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 20050
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||| ||||| || || |||||
Sbjct 20051 TTGCCTATGGGCTGGACAAGAA 20072
Score = 89.7 bits (98), Expect = 3e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
||| |||| || ||| | ||||| || ||| ||||| | ||| | || |||| |||
Sbjct 19249 GCAGTTGGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAA 19308
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| ||||| ||||||||||||||||| || || || ||||| ||||| |||| ||
Sbjct 19309 GTTGAAATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACA 19368
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492
|| || || || |||||||| || || || |||| | |||
Sbjct 19369 GATACCGAGAGACTGATTGGAGACGCAGCCAAGAATCAGGTTGC 19412
>seq166
Length=757612
Score = 89.7 bits (98), Expect = 3e-12
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
||| | || |||||| | || || ||||| ||||| | | | | || |||| |||
Sbjct 654130 GCAGTAGGCATTGATCTGGGCACCACTTATTCATGTGTGGGTATCTTCCAGCATGGCAAA 654071
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || || ||||||||||||||||| || ||||| || ||| ||||| | || |||
Sbjct 654070 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACCCCAAGCTATGTGGCCTTCACT 654011
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| || || ||||||||||||||||| ||
Sbjct 654010 GACACAGAGAGGCTTATTGGAGATGCTGCCAA 653979
Score = 86.0 bits (94), Expect = 4e-11
Identities = 104/137 (76%), Gaps = 6/137 (4%)
Strand=Plus/Minus
Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAA- 476089
||||| |||||| | || |||||||| || | ||||| || ||| ||| |||
Sbjct 651225 GAAGGGGAAAGAGCCATGACCAAAGATAACAATAT-CTTGGGGAAATTTGAAT--TGACT 651169
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| || ||||||||||||||||| ||||| || || || || ||||| ||||||||
Sbjct 651168 GGTATCCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATTGATGCC 651109
Query 476150 AATGGTATTCTTAATGT 476166
|| || ||||| || ||
Sbjct 651108 AACGGCATTCTCAACGT 651092
>seq666
Length=293398
Score = 87.8 bits (96), Expect = 1e-11
Identities = 115/156 (74%), Gaps = 5/156 (3%)
Strand=Plus/Plus
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447
|| || || |||||||||||||| ||||| | | || || |||||||| | || ||
Sbjct 75154 GTGGAGATTATTGCCAATGACCAGGGTAACCGCATCACCCCCTCATATGTGGCCTTCACC 75213
Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504
||| ||| | ||| ||||| ||||||||||| ||| ||||| | ||||| ||||
Sbjct 75214 AGTGAGGGTGAGCGTCTCATTGGTGATGCTGCTAAGAATC-AGCTGACCTCTAACCCTGA 75272
Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540
|| || | |||||||| || || ||||||||||
Sbjct 75273 GAACACAGTCTTTGATGCCAAGAGGCTGATTGGTCG 75308
>seq2100
Length=111253
Score = 86.0 bits (94), Expect = 4e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
|||||||| ||||| || || || |||||| | ||| || |||| || || | |
Sbjct 23625 AGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGG 23684
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
|||||| || |||||||||||||| || || | || || ||||| || || || |||
Sbjct 23685 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 23744
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
|| || || || || ||||| ||||| || || || | || |||||
Sbjct 23745 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 23804
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| |||||||| ||||| || || || ||
Sbjct 23805 ATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTG 23839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267407607402224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |