Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq86 149 7e-31 seq4 87.8 2e-12 seq577 86.0 7e-12 >seq86 Length=659436 Score = 149 bits (164), Expect = 7e-31 Identities = 950/1500 (63%), Gaps = 60/1500 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| | | || ||||||||| |||||| || ||| | Sbjct 244325 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGACGCTGCC 244384 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 244385 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 244443 Query 75331 CAATGCTGGTAC--ACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || || ||| | |||||| ||||||| |||||||| || ||| ||||| Sbjct 244444 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTCACCATGAAGGAC 244501 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 244502 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 244561 Query 75449 GGGGGTATTGG---------GATGCACATCC-AT-GATGTGAGAGCCAATAAATCTCGTA 75497 || || || || || ||||| || || | || ||| || ||| | Sbjct 244562 GGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGA-AGC---TACATCGC--- 244614 Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557 || || || || | || | || | | || ||||| | || | ||| || Sbjct 244615 ----TGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACA 244670 Query 75558 CAGCGCGCTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTAC 75610 | || ||||| | || | | ||||| | |||| ||| || |||| | ||| Sbjct 244671 CGGCTCGCTACG----TCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTAC 244726 Query 75611 TTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGA 75669 ||||||| ||||| ||| | | || ||||| ||| | | || ||| ||| | Sbjct 244727 CTGGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGA-AGAACACAGGAAA 244785 Query 75670 CGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAA 75729 || ||| | ||||| || || | || ||||||| || ||||| |||||||| Sbjct 244786 GGAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAA 244845 Query 75730 GCGGGT--TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTC 75787 | | || ||| | || | ||||| | | ||||| | || || || || Sbjct 244846 GAGAGTGGAGAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCCGGGCTG 244903 Query 75788 TCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG 75846 ||| || | ||| |||||||| || |||||||| | ||||| |||| || || Sbjct 244904 GACGAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAG 244962 Query 75847 AGCCAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGG 75905 | || | | || || ||| | | | ||| | || || || | || ||||| | Sbjct 244963 GGTGAA-GAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCG 245021 Query 75906 AGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGA 75965 | || || || || || ||||| |||||||| ||||| |||| |||||| ||||| ||| Sbjct 245022 AAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGA 245081 Query 75966 ATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGG 76025 | |||| || ||||| || || || ||||| || | | |||||||| |||| Sbjct 245082 ACCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGG 245141 Query 76026 ATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGA 76085 | ||| ||| || ||||| |||| || |||||||| | ||| |||| |||| Sbjct 245142 ACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG- 245200 Query 76086 CTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAA 76145 || ||||| || | | || || |||| ||| | | ||||| || | Sbjct 245201 --CGGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 245258 Query 76146 ACCGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGA 76204 || |||| |||| || | || || || || || | | ||| || | ||| Sbjct 245259 ACAAGATCATCGACATCAACTACTACCCGGTCCCCGAAGCCGAG-ACGTCCAACAAGCGC 245317 Query 76205 CACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTAC 76264 ||||| || || || | || || || ||||| || |||| || || || || | Sbjct 245318 CACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACAT 245377 Query 76265 GCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324 | || || |||||| || | | || | ||||| || ||||| || ||| Sbjct 245378 CCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCAC 245437 Query 76325 GCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAG 76384 || |||||||||| || || ||| | || | || | || |||| ||||||| ||| Sbjct 245438 GCCGCCCTGGAGGCCAGCTGCGAACTCGCCGCAGAGCTCGGCCCCTACGAGACATACGAG 245497 Query 76385 GGTTCTCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442 || ||| | |||| ||||| | || |||| || ||||||| || || || | | Sbjct 245498 GG--CTCGCCCGTCAGTAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCGACC 245554 Query 76443 -TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | | |||||| | | || ||||| ||| | | || | | ||||| Sbjct 245555 GACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGC 245614 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 || || |||| || ||||| || || |||||||| || ||| |||| || || || | | Sbjct 245615 CTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCC 245674 Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621 | || | ||||| | ||||||||| | || || | || ||||| || Sbjct 245675 ATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATC 245734 Query 76622 GTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 |||||| |||||| |||| ||||| | | || || || ||| | |||| |||||| Sbjct 245735 GTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAAG 245794 >seq4 Length=1291530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| ||| | || || || |||||||| || |||||||| || |||||| ||| Sbjct 279568 GAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCTGCT 279509 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || || ||| |||||||| | || |||||||||||||| || ||| || ||||| ||| Sbjct 279508 ATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATT 279449 Query 65197 TCCCGAGATGAGG 65209 | | || |||| Sbjct 279448 AGCAGGGACGAGG 279436 >seq577 Length=410616 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 |||||| || | ||| ||||| |||||||| | ||||| || ||||| || |||| || Sbjct 150954 AAAGTCCAACAAGCGTCACAGGCCTATTGGAATCGGTGTGCAGGGTCTGGCTGATGCCTT 150895 Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 ||| | |||||| ||||||| || ||| || | || || ||||| Sbjct 150894 TATCCTCATGCGCTACCCATTTGAAAGCCCAGAGGCCCAGTTACTCAACATTCACATCTT 150835 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGC 76353 ||||||||| ||| |||| |||||||||| |||||||| |||| Sbjct 150834 TGAAACCATCTATTACGCCGCCCTGGAGGCCAGTTGTGAGCTGGC 150790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596435461325440