Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq197 221 9e-52 seq1664 95.1 9e-14 >seq197 Length=465015 Score = 221 bits (244), Expect = 9e-52 Identities = 934/1468 (64%), Gaps = 14/1468 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| ||| |||| | ||| || || || || ||||| || | |||||| || |||||||| Sbjct 200136 TTTGTCAACGGCGGACACGTTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCAAT 200195 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 200196 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCAGAGAGCTCAAACTTCCCCAGGAGATT 200255 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||||||||| ||| || || ||| | | || || Sbjct 200256 GTTGTCCTTTGTCATGGCTCTCTCACCCTCGTAAACCTGAATCAAGACTCCTGGCTGGTT 200315 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAA 281654 |||||| || || | || | |||| | | | | || || || ||||||| | | Sbjct 200316 ATCTGAGTACGTGGAGAAGA-TCTGAGTCTGCTTCGTGGGGATGGTGGTGTTTCGCTTGA 200374 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 ||| | ||||||| ||||| |||||||| | || || || | |||| ||||| | Sbjct 200375 TAAGAGGTGTCATAACGCCACCGGCTGTTTCAATGCCCAGCGACAAGGGAGCCACATCCA 200434 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | ||||| || | ||| | || ||||| ||||| | | Sbjct 200435 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCTTGGACGG 200494 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| || || || |||||||| || | | | ||||| | | ||||||||| Sbjct 200495 CTGCACCATAGGCCACCGCCTCATCAGGGTTGATGCTCTTGTTTAGCTCTCTACCATTGA 200554 Query 281835 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 200555 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 200614 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 200615 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 200674 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | || || | ||| || || || ||||| || || || || ||| | Sbjct 200675 GTGTTCCCCTGAAGAGGTCCGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 200732 Query 282015 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 || || ||||| || || || | ||||||| ||||| | | ||||| || || Sbjct 200733 GTAAAAGTCAATGCCCTCAAAGAGTGAATCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 200792 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTG 282128 | | | || || | || || ||||| | ||||| | | ||| | | ||| Sbjct 200793 CAAGGTCCTCTTTGCTCTCTCGCAAGCTGTGCGCAGTCTCCTCACCGCTCTCTTGTTCTG 200852 Query 282129 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 282188 |||| || | || | ||||| || || || || ||| | | || | | Sbjct 200853 GCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTC 200908 Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 | || |||||||| || || || | | || | || | || ||| | || | || | Sbjct 200909 GGTTGTCAAAATCCTCCCCACCAAGGTGTGTGTCCCCGGCTGTGGCTTTCACCTCAAATA 200968 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 || || |||| | || | | || ||| || || ||||| | |||||| || | Sbjct 200969 TGCCGTCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGA 201028 Query 282309 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 | | || ||| || | ||| ||||| || || |||| || || || || | Sbjct 201029 GGATGTTGCGCTCTCCTCTTTTGCCTTTGTCAAGGCCGTAGGCAATGGCTGCCGCTGTGG 201088 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || | | |||||| || || | || ||| ||||| || ||||||| Sbjct 201089 GCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTT 201148 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | ||||| ||||| ||||| || || || || || || || |||| | || | || Sbjct 201149 GCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTC 201208 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | | | || ||| ||| | |||||||| | | ||| || ||||| | ||| | Sbjct 201209 CCAGAAAGGCCTCGGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATCTCTTCAG 201268 Query 282549 GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608 || | || ||| ||| || |||| || | | | || || | | Sbjct 201269 GACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTCGT 201328 Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668 | || || || || ||||| |||||| || || || || |||||| ||| || Sbjct 201329 TGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTTC 201388 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 | ||||| | ||||| |||||||| || || ||||| || || | ||| |||| | | Sbjct 201389 TTCCAATGAGCCGTTTGGCATCAAAGATTGTGTTGGTGGGGTTCATGGCAACTTGGTTCT 201448 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| |||||||| || || ||||| || ||||| | || || |||||||| | Sbjct 201449 TGGCAGCATCTCCGATGAGCCTCTCTGTGTCAGTAAAGGCCACGTAGCTGGGAGTTGTCC 201508 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 || ||||||||||| ||||||||||| ||||| |||| || | || || |||||| Sbjct 201509 TGTTGCCTTGATCATTGGCAATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAAG 201568 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAAT 282876 | || || || | ||| || ||||| Sbjct 201569 AGTAGGTGGTGCCCAGATCGATGCCAAT 201596 >seq1664 Length=147169 Score = 95.1 bits (104), Expect = 9e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| |||| |||||| |||||||||||||| || || | ||||||| Sbjct 20072 TTCTTGTCCAGCCCATAGGCAATAGCAGCTGCAGTTGGTTCATTGATTATACGCAAAACA 20013 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || | || ||||| || ||||| || | || || || || || || Sbjct 20012 TTGAGGCCAGAGATGGTGCCAGCATCCTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 19953 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| || || || || |||| |||| Sbjct 19952 GCAGGTACTGTGATCACAGCAT-TGTT 19927 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | ||| | |||| |||||||| ||||||||||| Sbjct 19438 CAAAAACTGTGTTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCGTCTCCAATCAGTC 19379 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 19378 TCTCGGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 19319 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | ||||| ||||| | || ||||| | ||| | Sbjct 19318 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTTCCAAGATCGA 19259 Query 282870 TACCAA 282875 | |||| Sbjct 19258 TTCCAA 19253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739747265217288