Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq722 149 1e-30 seq2100 140 6e-28 seq591 96.9 7e-15 >seq722 Length=280156 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| || || || | ||| || || || || ||||| ||||| || || || Sbjct 192180 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAC 192121 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| |||||||||||||| || || || || ||||| Sbjct 192120 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGA 192061 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| ||||||||||| || || || ||||| |||||| | || || || Sbjct 192060 ATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACC 192001 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || || | || || || || |||||||| Sbjct 192000 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 191954 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| | || || | ||| || || || || ||||| || || || || || Sbjct 192408 CCTCCCCTCAGGCAGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGAC 192349 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| |||||||||||||| || || || || ||||| Sbjct 192348 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGA 192289 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||| ||||| ||||||||||| || || || ||||| |||||| | || || || Sbjct 192288 ATGTCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACC 192229 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || || | || || || || |||||||| Sbjct 192228 TCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 192182 >seq2100 Length=111253 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| ||||| | ||| || || |||||||| || ||||| || ||||| Sbjct 23616 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGAC 23675 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || |||||||||||||| || || || || || || || Sbjct 23676 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 23735 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || || || || || || || ||||| || || | || || || Sbjct 23736 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 23795 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || ||||| || | ||||| ||||| |||||||| Sbjct 23796 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 23842 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| ||||| | ||| || ||||||||||| || || || || ||||| Sbjct 27350 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAA 27409 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || ||||| |||||||| || || || || || || || Sbjct 27410 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 27469 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || || || ||||| || ||| | || || || Sbjct 27470 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 27529 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || ||||| || | ||||| || || |||||||| Sbjct 27530 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 27576 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| ||||| | ||| || |||||||||||||| || || || ||||| Sbjct 23160 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAA 23219 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||||||||| || || || || || || || Sbjct 23220 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 23279 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || || || || || || || ||||| || || | ||||| || Sbjct 23280 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACC 23339 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || ||||| || | ||||| || || |||||||| Sbjct 23340 TCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 23386 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | ||| || || ||||||||||| || || || || || Sbjct 27578 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAC 27637 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || ||||| |||||||| || || || || || || || Sbjct 27638 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 27697 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || ||||| ||||| || ||| | || || || Sbjct 27698 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACC 27757 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| || | || || ||||| |||||||| Sbjct 27758 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 27804 >seq591 Length=312107 Score = 96.9 bits (106), Expect = 7e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60147 GAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCA 60206 |||| | |||||||| | || || ||||| || || ||| | || ||||||||||||| Sbjct 305827 GAGCTCTCTGGTGGTATTTCATCTCCAAAGGCATCGAGTACCTGGACACGGTGTTTTTCA 305886 Query 60207 TACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGT 60266 | || ||||||||||| || ||||| | || | ||||| || || || | || |||| Sbjct 305887 TTCTGAGGAAAAAGTTCAACCAGGTCACCTTCCTGCACGTCTACCACCACTGCACCATGT 305946 Query 60267 TTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | || | | ||| | ||||| || ||| | |||||||| || Sbjct 305947 TCACGCTGTGGTGGATCGGCATCAAGTGGGTGGCCGGAGGACA 305989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981600917057932