Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq345 132 6e-26 seq1701 95.1 1e-14 seq2415 84.2 3e-11 >seq345 Length=387903 Score = 132 bits (146), Expect = 6e-26 Identities = 488/751 (65%), Gaps = 25/751 (3%) Strand=Plus/Plus Query 162264 CCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACTGACGG 162323 |||||| |||| | | || |||| ||||||| || ||||| || ||| || || Sbjct 260587 CCACTTGACGACTCGGGCGAGAGCCAGCATGTCTGACGTGTCATATTTGCCGTTTGGGGG 260646 Query 162324 CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACT 162383 ||| | ||||||||| | || ||||| || || ||||||| ||||||||||||||| Sbjct 260647 CACTGATCCAGGAACCGAGGACATCCTCTGCAGGGTGGCCCACATGTGTTCGTCTGGACT 260706 Query 162384 ATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTTATCGTATAGAATGTAAGA 162443 || || || || ||| |||||||| | | ||| | | | | | | ||| Sbjct 260707 GTATGTGTCTTTTTCCCATTCCATGAATTTCTGAACCTCTCTGTTCTGCATCACGTATTT 260766 Query 162444 GACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGG 162503 || ||| ||| | || | |||||| ||| | || || |||| || | | || || Sbjct 260767 CACAAAGGCCCTAGAGACCACAAAGTAGGCGTTTCCTGAGAACATTGGGCTACTGATGGG 260826 Query 162504 AGG-GGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCT 162562 || ||||| ||| || | | || ||| || || | ||| ||| | Sbjct 260827 CGGCGGGCTTTTTCTCACGTCT-GTTCTGATGACG---CCGTTGGTGACATTGTGGTGGT 260882 Query 162563 TCCTCCACCTGGCCATCTTACTGGTAGACG--GGTG--TTCGGTCTCTAGACTGTTACGA 162618 | ||| || | ||| || | |||| |||| ||| || || | ||||| Sbjct 260883 ACTGCCA----GCGACCTTTCTTGGAGACACTGGTGACTTCAGTTTCCATGCTGTT---- 260934 Query 162619 CCCCCCA---AGGCCTT-CAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTC 162674 || |||| ||| ||| ||| ||||||||| |||||| || | ||||||||| Sbjct 260935 CCTCCCATTGAGGACTTTCAGAGCCATCACCATCTCCCTATTGGTTTTGATGGGAAAGTC 260994 Query 162675 GGTGCCGCAGAGATTAATAACATATTTCCACTTAACG-CTGAGTCCGTACAGATCCTGTA 162733 || || ||| ||| | || ||||||||| ||| | |||| | |||||| | | Sbjct 260995 TGTCCCACAGGTATTCAAAAGGTATTTCCACCGAACTTCAGAGTGCAG-CAGATCTTTCA 261053 Query 162734 GACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAG 162793 ||||||||||| ||||| || | ||| || || |||||||| || || || || Sbjct 261054 TGCAGTTCAGATCTGCCTGCACTCTGGACCATGAAGCATACACGACACTTTCTAATTTAC 261113 Query 162794 TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC-GGCCAGTGAGAACATC 162852 |||| ||||| |||||| || || ||||||| | |||| | || |||| || | | Sbjct 261114 TGGCTACAAAAACATTGGGAAAGCAGGAAACTACTTCTTTCACAGCCCTGTGAAAAGA-C 261172 Query 162853 GGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTC 162912 ||| | ||| || | || |||||||| | ||||| || || || || | | Sbjct 261173 GGGGAAGACTTCTGGTCAATATGGACGCAGTAGATGTTCTGCGGAGCATAAATAGATCGT 261232 Query 162913 AGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAAC 162972 || | || || |||||||||||||| | ||| | ||| || || || || || || || Sbjct 261233 AGGAGTCGTTCAAACATCTCTATCTTCTCGTGGATCACCATGGAGTATGCAATAGGAAAA 261292 Query 162973 TCAGCCTCCTCGCGACTGAGAGACCCTGTAA 163003 | |||||| ||| | || | |||||| Sbjct 261293 TTTAGCTCCTCCTCACTTAAAGGCACTGTAA 261323 >seq1701 Length=144001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 346/532 (65%), Gaps = 31/532 (6%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || || || | || | |||||| || ||||||||||| | || | Sbjct 139413 GCCAGCTCTTTGGGTGAGCTGAAATCATCCACGTGGATAAAAGCGTCTCCTTGAACAAAG 139354 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| | || || || || | || || | |||| ||| | Sbjct 139353 TTCTCATAGTTTTCTCTGGTCGTGCCAAGAACCACCGGCACTG----TGCCCACAGACAG 139298 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 || |||||||||||||| || |||||| |||| | ||||||||||| | | ||| Sbjct 139297 GGGGATGTAGAGTTTTTCGGTGATGTAGTCCTTGTGGATTGAGTTCTCAAAGGACAAATA 139238 Query 177122 GAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179 || ||||| || | |||| |||||| | || | || | || || || || | | Sbjct 139237 AAACTTACAACTAGCCACAGTA--GGGATGTAATCTTTGTCAGCGATGTACTCCCCAAAT 139180 Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239 | | || || |||| | || |||||||| | ||| ||| ||| || || Sbjct 139179 GCATGTCCATACGCATGAACTTCAATGTGTTTGTACAACTCGTTGTAATATTTCACTCGT 139120 Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACG 177299 || || || ||||| |||||||||| |||||| || | ||| | ||||| || Sbjct 139119 ACATGTTCAGGATTCCAGTTGCTGACGATCCAGCAGACCAGTTTG-TTTTTGC----TCG 139065 Query 177300 GGATTCGATACTAATGCAGTGTCTCTG-AGCGTTAGT-GATCCATAGGGCACGTGAATAT 177357 | | | | | | || || |||| || | | || ||||| ||||| || |||| Sbjct 139064 GTGGTACAAAGTCCTCCACAGTATCTGCTGCTACAATAGACCCATAAGGCACTTGGATAT 139005 Query 177358 CCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAG- 177416 | || || | | ||| | | || |||||||| | ||| | || || |||| Sbjct 139004 CAGAATCCTGACGGTAATTGAGAGTCAGATTGAACAAGTTATTAATCCC----GGGAAGC 138949 Query 177417 -GGGCTGTTACTG----GGCGATTCTAAGTTCATCCATATCCACTTTTGAAA 177463 |||||| | || ||||| |||||||||||||| ||||| || || || Sbjct 138948 TGGGCTG--AATGCGACGGCGACTCTAAGTTCATCCAGATCCATTTCTGGAA 138899 >seq2415 Length=124966 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || ||| | | || | |||||| || |||||||||| || || | Sbjct 8455 GCCAGCTCTTTGGGTGACTTAAAATCATCCACGTGGATAAAAGCGTCTCTTGGAACAAAG 8396 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATA-AGAGA 177064 || ||||| || ||||| | ||| || || || | || || | || |||| |||| Sbjct 8395 TTCTCGTAGTTTTCTCTGGTTGTGCCAAGAACCACCGGCACTGTGCC---CATAGAGAGG 8339 Query 177065 TCG--GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAG 177122 | |||||||||||| || || ||||| ||||| | ||||||||||| | | ||| Sbjct 8338 GGGACGTAGAGTTTTTCAGTGATGTAGTCTTTGTGTGCTGAGTTCTCAAAGGACAAATAA 8279 Query 177123 AATTTACA 177130 || ||||| Sbjct 8278 AACTTACA 8271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578301939564800