Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq86 145 1e-29 seq577 96.9 4e-15 seq990 89.7 6e-13 >seq86 Length=659436 Score = 145 bits (160), Expect = 1e-29 Identities = 949/1500 (63%), Gaps = 60/1500 (4%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || || | | ||||| |||| |||||| |||||| Sbjct 245794 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 245735 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | || || | ||||||||| | ||||| | || | Sbjct 245734 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 245675 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 245674 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 245615 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 245614 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 245555 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910 | | || || || |||||||||| |||| || | ||||| |||| | ||| || Sbjct 245554 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTACTGACGGGCGAG--CC 245498 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 ||| | || || |||| || | || | || | ||| ||||| |||||||||| || Sbjct 245497 CTCGTATGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGC 245438 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || ||||| || ||||| | || | | || |||||| || || | Sbjct 245437 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGG 245378 Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 | || || || || |||| || ||||| || || || | || || || ||||| Sbjct 245377 ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTG 245318 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 ||| | || ||| | | || || || || || | || |||| |||| || Sbjct 245317 GCGCTTGTTGGACGT-CTCGGCTTCGGGGACCGGGTAGTAGTTGATGTCGATGATCTTGT 245259 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 111209 | || ||||| | | ||| |||| || || | | || ||||| || Sbjct 245258 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG-- 245201 Query 111210 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 |||| |||| ||| | |||||||| || |||| ||||| || ||| ||| | Sbjct 245200 -CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 245142 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 |||| |||||||| | | ||||| || | |||| | || || || |||| | Sbjct 245141 CCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGT 245082 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 ||| ||||| |||||| ||||||| || |||||||||||||||||||||||||| || | Sbjct 245081 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTT 245022 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC 111448 | ||||| || | || || || | ||| | | | ||| || || | || || Sbjct 245021 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTCTTCACC 244963 Query 111449 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGA 111507 | || ||| ||| || | |||||||| || |||||||| ||| | || ||| Sbjct 244962 CTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTCGTC 244904 Query 111508 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCGC 111565 || || || || | ||||| | | ||||| | || || ||| || | | Sbjct 244903 CAGCCCGGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACTCTC 244846 Query 111566 TTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCG 111625 |||||||| ||||| || ||||||| || | || || ||||| | ||| || Sbjct 244845 TTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCC 244786 Query 111626 TCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | ||| ||| || | | ||| ||||| || | | || |||||| || || || Sbjct 244785 TTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAG 244727 Query 111685 ATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTG 111737 || | |||| | || ||| | | ||||| || | || ||||| || | Sbjct 244726 GTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTAGCGAGCCG 244671 Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 111797 || ||| | || | ||||| || | | || | || | || || || || Sbjct 244670 TGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCC----- 244616 Query 111798 TACGAGATTTATTGGCTCTCACATC-AT-GGATG---------TGCATCCCAATACCCCC 111846 | ||| || ||| || | || || ||||| || || || || || Sbjct 244615 --AGCGATGTA---GCT-TCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCC 244562 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||| |||| || || |||| |||| | | || || | ||||| || | ||| ||| Sbjct 244561 AGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTC 244502 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTG 111964 ||||| ||| || |||||||| ||||||| |||||| | ||| || || || ||| Sbjct 244501 GTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG--GTCCCGGCGTTG 244444 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 112023 |||||||| || | ||||| ||||| || | | |||| || ||| ||||| | Sbjct 244443 AAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTCGAT 244385 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | ||| || |||||| ||||||||| || | | |||| ||||| ||||| ||| || Sbjct 244384 GGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 244325 >seq577 Length=410616 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| |||||| || | || ||||| || | ||| ||| || || || Sbjct 151929 CTCATCTTTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 151988 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 151989 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 152048 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| ||||| || | || || || | ||| Sbjct 152049 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 152081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 ||||| || | |||||||||| | || || | |||| ||||| || |||||| Sbjct 150751 GGAGAGCCGGCGTAGGTTTCATACGGGCCAAATTCTGCTGCCAGCTCACAACTGGCCTCC 150810 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 |||| |||| ||| |||||||||||||| || || | || ||| || Sbjct 150811 AGGGCGGCGTAATAGATGGTTTCAAAGATGTGAATGTTGAGTAACTGGGCCTCTGGGCTT 150870 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||||| |||||| | ||||| |||| || ||||| || ||||| | |||||| Sbjct 150871 TCAAATGGGTAGCGCATGAGGATAAAGGCATCAGCCAGACCCTGCACACCGATTCCAATA 150930 Query 111083 GGTCTGTGTCGCATATTAGACTTT 111106 || ||||| ||| | || |||||| Sbjct 150931 GGCCTGTGACGCTTGTTGGACTTT 150954 >seq990 Length=431866 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 239315 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 239256 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 239255 AAGTCGAACGGGTTCTCCG 239237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627890787004800