Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq86 165 1e-35 seq4 96.9 4e-15 seq577 89.7 6e-13 >seq86 Length=659436 Score = 165 bits (182), Expect = 1e-35 Identities = 886/1390 (64%), Gaps = 42/1390 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 245700 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 245641 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || |||||||| | | || | || || ||| Sbjct 245640 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 245581 Query 118302 TTGAG-AGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 118357 || || ||| ||| |||| | || | | |||| | || ||||| || |||| Sbjct 245580 TTCAGCAGCTTCC-AGTCCCACAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTG 245525 Query 118358 GAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 118415 |||||| || | |||| ||||| ||||| ||||||| || ||||| | | Sbjct 245524 GAGGATGCCCTTACTGACG--GGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCTGCG 245467 Query 118416 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 || | |||| |||| ||||| ||||| ||||| || || || || || || | || Sbjct 245466 GCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTG 245407 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 118535 | || ||| ||| | || |||| |||| || || || |||| || ||| Sbjct 245406 AGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGA 245347 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC--- 118592 || ||||| |||| || || || | || | | | || ||| || ||| || Sbjct 245346 CCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCT---CGGCTTCGGGG 245290 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 || || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 245289 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 245230 Query 118653 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 ||||| | | | || ||| | || |||| |||| ||| | |||||| Sbjct 245229 GAGGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCG 245173 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || ||||| || || || | ||| ||||| |||||||| | | || ||| Sbjct 245172 ATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTG 245113 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 || | ||| | || |||||||||| ||||| || || ||| |||| || || Sbjct 245112 CAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCG 245053 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||||| |||||||| || || || ||||||| || || || | |||| Sbjct 245052 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAG 244993 Query 118893 ACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 | | | || || || | || | | ||| || | ||| || | |||||||| Sbjct 244992 AGCTGCTGCGCCTTCACCACCCTC-TTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAG 244934 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGA 119010 || ||||| || ||| | ||| ||||| || || ||||| || | | Sbjct 244933 CTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCG-CTGGGACACATCA 244875 Query 119011 GAGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||||| | || | ||| || | ||||||||| ||||| |||||||| | || Sbjct 244874 AGGACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGC 244817 Query 119069 CGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 |||| || || | | | ||| || | | || || || || ||||| | Sbjct 244816 GTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGA 244758 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGA 119183 |||| | | || |||||||||||||||||||| |||| | ||| || | Sbjct 244757 AGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGT 244698 Query 119184 CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATA 119243 | || |||||| || || | || ||| ||| | || | ||||| || | | Sbjct 244697 TG-CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAAT 244639 Query 119244 CCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGACATCGTGGA 119301 || | ||| | ||| || || || || || ||| | | || || | | Sbjct 244638 CCGTTGGAGTTGCCGTTGGTGCCAGCGATGT-AG-CTTCCCGTCGATCGGATGCAGCTCA 244581 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 || || || || || || |||| || || ||||||||| | | || || ||| Sbjct 244580 CCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGT 244521 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 |||| || ||||| ||| |||| | | || ||||||||||| |||| || |||| Sbjct 244520 AGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCC 244461 Query 119422 TGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 119480 | || || ||||||||||| || || | |||||| ||||| || | | |||| Sbjct 244460 GGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGG 244402 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 || ||||||||| | | | ||| |||||| |||||| || || | ||| |||| | Sbjct 244401 AGGTTGTAGGTCTCGATGGCAGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTC 244342 Query 119541 ATAAACATGT 119550 || | ||||| Sbjct 244341 ATGAGCATGT 244332 >seq4 Length=1291530 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||||| || ||| || || ||||||||||| || | ||||| Sbjct 279436 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 279495 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||| | || ||| |||||||| |||||||| ||||||||||| ||||| | Sbjct 279496 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 279555 Query 130155 CAAAGAGACGCTC 130167 | | |||||||| Sbjct 279556 CCACAAGACGCTC 279568 >seq577 Length=410616 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| | ||||||||||||||| ||| ||||| ||||| Sbjct 150344 TAGATGTTGCTTGTGTACGCCTCAATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 150403 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| || || ||||| Sbjct 150404 GCTGTGGGCATCGGGGCCAAAAGCAGACTGTT 150435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618296144845280