Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq990 93.3 5e-14 seq86 87.8 2e-12 >seq990 Length=431866 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||||||||| ||| ||| || | ||||| Sbjct 238343 GCCTTTGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTG 238402 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || |||| ||||||||| ||| ||| |||||| Sbjct 238403 AAGAAGAGAGGCCTGATGCCTGGCCTAACCTTCAGCAACGAGCTCATCAGTCGAGACGAG 238462 Query 94936 G 94936 | Sbjct 238463 G 238463 >seq86 Length=659436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 562/889 (63%), Gaps = 49/889 (6%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | | || || || ||| |||||| || ||| | Sbjct 244325 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGACGCTGCC 244384 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 244385 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 244443 Query 104341 CAATGCTGGTAC--ACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | || || ||||||| |||||||| || ||| ||||| Sbjct 244444 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTCACCATGAAGGAC 244501 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 244502 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 244561 Query 104459 GGGGGTATTGG---------GATGCACATCC-AT-GATGTGAGAGCCAATAAATCTCGTA 104507 || || || || || ||||| || || | || ||| || ||| | Sbjct 244562 GGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGA-AGC---TACATCGC--- 244614 Query 104508 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 104567 || || || || | || | || | | || ||||| | || | ||| || Sbjct 244615 ----TGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACA 244670 Query 104568 CAGCGCGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTAT 104620 | || ||||| | || | | ||||| | | ||| || | |||| | || Sbjct 244671 CGGCTCGCTACG----TCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTAC 244726 Query 104621 CTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGAC 104680 || || || |||||| || | | || ||||| ||| || ||| ||| | Sbjct 244727 CTGGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAG 244786 Query 104681 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 104740 |||||| | | | | || || |||| ||| | ||||| || || || ||||||||| Sbjct 244787 GAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAG 244846 Query 104741 AGAGTTGAGGAGAGTGGC---AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 ||||| |||||| | | ||||| | | ||||| | || || || || Sbjct 244847 AGAGT---GGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGCGAGTGTCCCGGGCTG 244903 Query 104798 TCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 ||| ||| | ||| |||||||| || || ||||| | || ||| | ||||| | Sbjct 244904 GACGAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAG 244962 Query 104857 GGCGACTGCGACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 || || | |||| || || | | | ||| | || || || |||| || |||| Sbjct 244963 GGTGAAGAGGGTGGTG-AAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCG 245021 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 | || || || || |||||||| ||||| ||||| || ||| ||||| || || ||| Sbjct 245022 AAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGA 245081 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 | |||| ||||| | ||| ||||| ||||| | |||| | || ||| | Sbjct 245082 ACCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGG 245141 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 | ||| ||| || || ||||| || || ||||| ||| || ||| || Sbjct 245142 ACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGT 245190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583129653809120