Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq86 235 6e-57 seq1241 95.1 1e-14 seq1008 89.7 6e-13 seq990 87.8 2e-12 >seq86 Length=659436 Score = 235 bits (260), Expect = 6e-57 Identities = 482/702 (69%), Gaps = 12/702 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| |||||||| || || || | || ||| || Sbjct 244412 AAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTG 244471 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | | |||||||| ||| ||||| ||||||||||| || || Sbjct 244472 TCCAGCTGCTTCCTGCTCACCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTG 244531 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC-CACTGCTCGAACGT 53445 ||| |||| || | ||| ||||||| | || || ||||| | | || | | | Sbjct 244532 AAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTG-CAT 244590 Query 53446 CCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||| ||| ||| | | | ||| || || |||||| | || | ||| | || || | Sbjct 244591 CCGATCGA-CGGGAAGCTACATCGCTGGCACCAACGGCAACTCCAACGGATTGGTCCCGA 244649 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| | || | |||||||||||| || |||||| ||||||| || ||| | | Sbjct 244650 TGCTGAGAGTTTACAACAACACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCG 244709 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 || | |||||||| ||||| || ||||||||| |||| | | || || || |||||| Sbjct 244710 GGGCCTTCGCCATGTACCTGGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGA 244769 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || ||| || ||||||| Sbjct 244770 AGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTAC-GCCTTGTGGATC 244828 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 |||||||| |||||| | | ||||||| || |||| |||| | ||||||| || | | Sbjct 244829 CCGGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGC 244888 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGT--ATCGGACG 53800 ||||| ||||| || | | ||| || || |||||||| | || | | | | || Sbjct 244889 GAGTGTCCCGGGCTGGACGAGTG-CTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATA 244947 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 | | || |||| | | |||| | ||| ||||||| || | ||| | || ||| Sbjct 244948 TGAGAAG-GAAGGGAGGGT-GAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATC 245005 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 || || |||| || || || ||||| |||||| ||||||||| | |||| | Sbjct 245006 ATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGG 245065 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| ||||| | ||| |||||||| |||||| Sbjct 245066 AAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAAC 245107 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || ||||| || || |||||| |||||||||||||| | Sbjct 245614 CCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTC 245673 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| ||||||| | |||||||||| ||| || || | || ||||| || Sbjct 245674 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGAT 245733 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAA 55671 ||||| |||||| ||||||||||| | || | | ||||||| | |||| || Sbjct 245734 CGTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAA 245793 Query 55672 GA 55673 || Sbjct 245794 GA 245795 >seq1241 Length=338012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||||||| ||||| ||| || || ||||| || || Sbjct 152586 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATGCGAGTACCAAACTGA 152645 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || || ||||| ||| Sbjct 152646 CCCAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCACA 152705 Query 117425 ATCGT 117429 || || Sbjct 152706 ATGGT 152710 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| |||| |||||| ||||| ||||| || | || || |||||||| Sbjct 152586 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATGCGAGTACCAAACTGA 152645 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| | ||||||| |||||| || ||||| || || ||||| Sbjct 152646 CCCAGA-GGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCAC 152704 Query 152148 AATCGT 152153 ||| || Sbjct 152705 AATGGT 152710 >seq1008 Length=638704 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || ||||| |||||||||||| Sbjct 473911 GTGAAGATGTATCGAGGGCTGGCTGAGTCCTTGCCGCCGTGCAGCCTAGTTCCAAACTGT 473970 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| || ||||| | ||||||| ||||| || ||||| || ||| || Sbjct 473971 CCCAGA-GGCTGCAGCAGGTTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAACCGAC 474029 Query 152148 AATCGT 152153 ||| || Sbjct 474030 AATGGT 474035 >seq990 Length=431866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 239315 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 239256 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 239255 AAGTCGAACGGGTTCT 239240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547092958482400