Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq86 210 2e-49 seq2100 167 3e-36 seq722 152 6e-32 seq577 113 5e-20 seq1241 87.8 2e-12 >seq86 Length=659436 Score = 210 bits (232), Expect = 2e-49 Identities = 821/1267 (65%), Gaps = 44/1267 (3%) Strand=Plus/Minus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| | |||||||| | |||| || || ||| || | |||||||| Sbjct 245540 CCCACATGTCGTACTGGAGGATGCCCTTACTGACG--GGCGAGCCCTCGTATGTCTCGTA 245483 Query 80598 CGGGCCCTCCGTCTT-GGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGATAAATGC 80653 ||||| | ||| ||| || || || | ||||| |||| ||||| || ||| Sbjct 245482 GGGGCCGAGC-TCTGCGGCGAGTTCGCAGCTGGCCTCCA---GGGCGGCGTGGTAGATGG 245427 Query 80654 ACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGT-CGAACGACAAGCCCATC 80712 ||| |||| |||| | | || | || ||| | | |||||| | |||| Sbjct 245426 TCTCGAAGATCTGGATGTTGAG-CAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATC 245368 Query 80713 ATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTC 80772 | ||||| | || ||||| ||||| |||||||| ||||||| | |||||||||||| Sbjct 245367 AGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTG 245308 Query 80773 GATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGT 80832 || |||||| || || | ||||| |||| | ||||||| ||| ||||| | Sbjct 245307 GACGTCTCGGCTTCGGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTT---T 245251 Query 80833 GTAACAAC--CCGTG-TAACATCATGAAGTTTCTGAAAGTCGAA--TTGGTTCCC-CTTC 80886 | || | || || | || || |||| |||||||| | | || | | Sbjct 245250 TTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTG 245191 Query 80887 AC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA--GCATC 80942 || | ||| | ||| | ||| ||||| ||||| ||||||||||| || || Sbjct 245190 ACGTACATGTTG--AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGG 245133 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 |||| ||| || | || ||||| | || | || || || |||||||| | ||| Sbjct 245132 TGTA--CTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 245075 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| ||||||||||||||||||| |||||| || || ||||| ||| ||| Sbjct 245074 GTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTG 245015 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 |||| || |||||||| ||| | || ||||||| |||||| | | | ||||| Sbjct 245014 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTC 244955 Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | |||| ||| ||| |||||| ||||||| | || || || | | Sbjct 244954 CTTCTCATATCTGGTGTAGAGCTTC-TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGG 244896 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 | |||||| | || ||||||| | |||||| || | |||| || ||||||||| Sbjct 244895 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 244836 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 ||| |||||||| | |||| ||| ||||| | | | | |||||| | || || Sbjct 244835 GGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 244776 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | || ||| || ||||| | | ||| ||||| || ||||| |||| ||||| Sbjct 244775 TCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGA 244716 Query 81362 TCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | ||| |||| ||| ||||||| |||||| || || || ||| | | Sbjct 244715 AGGCCCCGGGTCTCTTG---TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAA 244659 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475 | | || ||| |||| | || | || | ||||| || || |||| ||| Sbjct 244658 CTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCAGCGATGTAGCTTCCCG 244599 Query 81476 TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 | | || | ||| | | | ||||| || || | |||| ||||| | || | Sbjct 244598 TCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGC 244539 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 || | |||| ||| || || || || |||||||| || | |||||| |||| ||| | Sbjct 244538 ACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGC 244479 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 |||| |||| ||| || | || | ||||| ||||| || || || | ||||| ||| Sbjct 244478 AGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGA 244419 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGA 81714 | | | |||| |||| ||||| || || | |||| | || || ||||| Sbjct 244418 ACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCG-ATGTCTCGCCCGTGG 244360 Query 81715 ATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCGCCTGCGTTCAGGTACATC 81774 || || | | || | ||| | ||||| ||| ||| |||| | | ||| || ||| Sbjct 244359 ATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATC 244300 Query 81775 TTCTGCA 81781 ||| ||| Sbjct 244299 TTCAGCA 244293 >seq2100 Length=111253 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||| || || || || ||||| ||| | | Sbjct 23842 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 23783 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| ||||| ||||| |||||||| || || || |||||| Sbjct 23782 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 23723 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||| Sbjct 23722 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAT 23663 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||||||| || || || || | ||||| | ||||| Sbjct 23662 ATCCAAAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGG 23616 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||||||| | | Sbjct 23614 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 23555 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| |||||||| || || || || ||| Sbjct 23554 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGATCAG 23495 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 23494 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 23435 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | ||||| | ||||| Sbjct 23434 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGG 23388 >seq722 Length=280156 Score = 152 bits (168), Expect = 6e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || || || ||||| || || || ||||| ||| | || Sbjct 191954 ATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 192013 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || |||||||| || || || |||||||| |||||| Sbjct 192014 GATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAG 192073 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | ||||| ||||||||||| || || || |||| || ||||| | ||||| ||| Sbjct 192074 CAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAAT 192133 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||||| || || || || Sbjct 192134 ATCCAGAAGGAGTCCACCCTCCACCTGGT 192162 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || || || |||||||| || || ||||| ||| | || Sbjct 192182 ATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGGAGCCCAGT 192241 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || |||||||| || || | |||||||| |||||| Sbjct 192242 GATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGACATTCCTCCTGACCAG 192301 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | ||||| ||||||||||| || || || |||| || ||||| | ||||| || Sbjct 192302 CAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTAAAAC 192361 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||||| || || || || Sbjct 192362 ATCCAGAAGGAGTCCACCCTCCACCTGGT 192390 >seq577 Length=410616 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 |||||||| || ||||| | ||| ||||| || || ||||| |||| |||||| | | Sbjct 151948 TCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 152007 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| |||||||||||| ||||||||| ||||| ||||| ||| |||| | Sbjct 152008 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCG 152067 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| ||||| Sbjct 152068 ATGATGGCGTACCAGAGCTGCTGAGCCTTCACCAC 152102 >seq1241 Length=338012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | || ||||||||||| || || ||| ||||| | || |||| Sbjct 152710 ACCATTGTGAACTTAGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCC- 152652 Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||||| |||||||| || || | || ||||| |||||||| ||| |||||||||| Sbjct 152651 TCTGGGTCAGTTTGGTACTCGCATTAATGGAGGCAAAGATGCTGCCAGCCCCCGTTACAT 152592 Query 32244 CTTCACC 32250 ||||||| Sbjct 152591 CTTCACC 152585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570182165706560