Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq60 145 6e-30 seq4888 105 5e-18 >seq60 Length=641354 Score = 145 bits (160), Expect = 6e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||||| |||||||||| || || |||||||| ||||| || ||||| |||||||| || Sbjct 475684 CATGTCCTTGTACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATC 475625 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| ||||| | ||||||| ||||||| ||||| | ||| |||||||| || Sbjct 475624 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATC 475565 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 475564 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 475517 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 476582 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 476523 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| | || | |||||| |||||||| || ||||| ||||||| Sbjct 476522 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 476463 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGA 30104 ||||| |||||||| | ||| ||||| || || || ||||||| Sbjct 476462 ACGTAGAACTGACAGAGGGCATGGCAGGGGGGCAGCGCCATGA 476420 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 ||||||||||||||||||||| |||||| || | |||||| ||||| ||| ||||| || Sbjct 476337 CTTTGGGGTTCCAGGCGCACATGATGATCCGTCGGTCTTCCGGGTTTTTCTTGATGGTGT 476278 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCC 30201 | | | |||||| ||||| || || || Sbjct 476277 CGATGATGTTTTGTAGCTGGTCGACACC 476250 >seq4888 Length=17061 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||||||||||||||| | ||| |||||| || |||| || || ||||| || ||||| || Sbjct 10818 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 10877 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||| ||||| || ||||| |||||||| |||| | ||||| Sbjct 10878 GAACCAGGTCTTCCTGCCCATGATCACCACATTCTTCCTGCCT 10920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406221325078896