Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2100 102 5e-17 seq722 96.9 2e-15 >seq2100 Length=111253 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| ||||| ||| || || || ||||| || || || Sbjct 27577 GCCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGA 27636 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 27637 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 27696 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||||| || |||||| | ||||| | ||| ||||| | ||||| Sbjct 27697 GATGCCCTCCTTATCCTGGATCTTG-GCCTTAACATTCTCAATGGTGTCACTGGGCTCCA 27755 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || | ||| || ||||| ||||| | ||||||||||| |||||||| ||| Sbjct 27756 CCTCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTG 27808 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | || | ||||| ||| || ||||| || || || || || Sbjct 23615 GCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGA 23674 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 23675 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 23734 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||||| || ||| ||| | || ||| | ||| ||||| | ||||| Sbjct 23735 GATGCCCTCCTTATCCTGGAT-TTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCA 23793 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| ||| || ||||| ||||| | || || ||||| ||||||||||| Sbjct 23794 CCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 23845 >seq722 Length=280156 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || || | ||||| ||||| ||| |||||| || || || || || || Sbjct 192181 GCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGA 192122 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || |||||||| ||||| |||| | ||| ||||| || || Sbjct 192121 CAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGG 192062 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | || ||| | ||| || || | ||||| Sbjct 192061 AATGCCTTCTTTATCCTGAATCTTT-GCCTTCACGTTCTCAATGGTATCACTGGGCTCCA 192003 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| ||| || || || || || | |||||||| ||||||||||| || Sbjct 192002 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 191951 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||||| ||| |||||| || ||||| || || || || || || | ||||| Sbjct 192391 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCTTC 192332 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || |||||||| ||||| |||| | ||| ||||| || || | | || || || Sbjct 192331 CAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATCCTG 192272 Query 34617 GATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||||| | || ||| | ||| || || | |||||| |||| ||| || || | Sbjct 192271 AATCTTT-GCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCT 192213 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | |||||||| |||||||||||| Sbjct 192212 TCCCAGTGAGGGTTTTCACGAAAATCTGCATG 192181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314660602223204