Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq60 132 4e-26 >seq60 Length=641354 Score = 132 bits (146), Expect = 4e-26 Identities = 128/162 (79%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || ||||| | |||||||| ||||| ||||| ||||||| || ||||||||| |||| Sbjct 476410 GACCTCCCCATCATGGCGCTGCCCCCCTGCCATGCCCTCTGTCAGTTCTACGTCTGCGAC 476469 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 |||||||||||||| ||||| || || || || | |||||||| | || ||||| || Sbjct 476470 -GGGGAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGACATGGGTCTGGGCGTGCCTTT 476528 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || ||||| || ||||| |||||||| || || Sbjct 476529 CAACATCGCCAGCTACGCACTTCTCACCTACATGATTGCACA 476570 Score = 132 bits (146), Expect = 4e-26 Identities = 128/162 (79%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || ||||| || || |||||||| ||||| || | ||| Sbjct 476570 TGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGCACGCCCAGACCC 476511 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| | || || || || ||||| |||||||||||||| |||| ||||||||| || Sbjct 476510 ATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCC-GTCGCAGACGTAGAACTG 476452 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| ||||| |||||||| | ||||| || Sbjct 476451 ACAGAGGGCATGGCAGGGGGGCAGCGCCATGATGGGGAGGTC 476410 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||||||||| || ||||||| || ||||| |||||||| | ||| ||| || Sbjct 475550 GGAGTGAAGATCTGGGATGCCAACGGGTCCCGTGACTTCCTGGACAACCTGGGCTTCACA 475609 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 |||||||||| || |||| || || || || ||||| ||||| |||||||| || Sbjct 475610 GAGAGGGAGGAGGGGGATCTGGGACCTGTGTATGGTTTCCAATGGAGGCACTTTGGTGCA 475669 Query 34442 GAGTA 34446 ||||| Sbjct 475670 GAGTA 475674 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||| ||||| || || || || |||| || ||||||||| Sbjct 475674 TACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATCCCCCTCCTCC 475615 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | |||||||| ||||| || ||||||| || |||||||||||| Sbjct 475614 CTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATCTTC 475555 Query 7019 ACCCC 7023 || || Sbjct 475554 ACTCC 475550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448161608199360