Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2100 161 2e-34 seq722 154 3e-32 seq2276 95.1 3e-14 >seq2100 Length=111253 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || || |||||||||||||| || || | |||||| | |||||| Sbjct 27365 AGAACAAGGTGGAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 27424 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||| ||| Sbjct 27425 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 27484 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||||||| | |||||||| || ||||| || Sbjct 27485 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTT 27544 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 27545 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 27576 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| |||||||| || |||||||| || || | ||||| | |||||| Sbjct 23403 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 23462 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || || ||||| || | || ||||| ||| Sbjct 23463 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATCC 23522 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| | |||||||| || ||||| ||| Sbjct 23523 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 23582 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 23583 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 23614 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || || ||||| |||||||| || || | |||||| | ||||| Sbjct 23175 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCC 23234 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | || ||||| ||| Sbjct 23235 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 23294 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| || |||||||| | ||| ||||| || ||||| || Sbjct 23295 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTT 23354 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 23355 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 23386 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||||||||| || || || | ||||| | |||||| Sbjct 23631 AGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 23690 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||| ||| Sbjct 23691 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 23750 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| || |||||||| | || ||||| || ||||| || Sbjct 23751 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTT 23810 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 23811 TTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 23845 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 27593 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 27652 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||| ||| Sbjct 27653 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 27712 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| || ||||| || Sbjct 27713 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 27772 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | |||||| || Sbjct 27773 TTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 27807 >seq722 Length=280156 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || ||||| || || |||| ||||| | |||||| Sbjct 192165 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTGCGGCCATCT 192106 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| || | || ||||||||||||| ||||| || ||| Sbjct 192105 TCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 192046 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| |||||||| || ||||| ||| | || ||||| || ||||| ||| Sbjct 192045 TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 191986 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || || || | |||||| || Sbjct 191985 TTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 191951 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || |||| ||||| | |||||| Sbjct 192393 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCT 192334 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| || | || ||||||||||||| |||| || ||| Sbjct 192333 TCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATCC 192274 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| |||||||| || ||||| ||| | || ||||| || ||||| ||| Sbjct 192273 TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTC 192214 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | |||||| Sbjct 192213 TTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 192182 >seq2276 Length=113941 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||||||||| || ||| Sbjct 86786 GGTAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTAAGAATGGAAAAGAGACATAAC 86727 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| |||||||||| || |||| ||| | ||| ||| | ||| |||| |||| | Sbjct 86726 TACGTGAGAAAAGTCGCTGAGACCGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 86670 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || || ||||| | || | ||| Sbjct 86669 AATGTGGCGGGAATGGTCTTGGCTGGCTCTGCTGATTTTAAGACTGAACTAAGCCAGTCT 86610 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 86609 GACATGTTTGACCC 86596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158884848789620