Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq60 141 8e-29 seq4888 96.9 3e-15 >seq60 Length=641354 Score = 141 bits (156), Expect = 8e-29 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || ||| Sbjct 476582 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 476523 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| | || | |||||| ||||| || || ||||| ||||||| Sbjct 476522 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 476463 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGA 29876 ||||| |||||||| | ||||||||| || || || ||||||| Sbjct 476462 ACGTAGAACTGACAGAGGGCATGGCAGGGGGGCAGCGCCATGA 476420 Score = 120 bits (132), Expect = 2e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||| ||||| || ||||| |||||||| || ||||| ||||| | |||| Sbjct 475662 AAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATCCCCCTCCTCCCTCTCTGTGAAG 475603 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||| | ||| |||||||| ||||||||||| || || ||||| Sbjct 475602 CCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATCTTCACTCCTTTCTCT 475543 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| |||| ||||| || || Sbjct 475542 GACAGCTCCTTGGCATTTGTTGATCC 475517 >seq4888 Length=17061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||||||||||||||| | ||| | |||| || |||| || || ||||| || ||||| || Sbjct 10818 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 10877 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||| ||||| || ||||| |||||||| |||| | | ||| Sbjct 10878 GAACCAGGTCTTCCTGCCCATGATCACCACATTCTTCCTGCCT 10920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406074157349368