Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq86 385 7e-102 seq577 87.8 2e-12 >seq86 Length=659436 Score = 385 bits (426), Expect = 7e-102 Identities = 1242/1915 (65%), Gaps = 21/1915 (1%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 ||||| ||||| || || || || || ||||| |||| || || || ||||| || || Sbjct 245751 AGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTG 245692 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 ||||| || | || | || || ||||| |||| || || || || || || || ||| Sbjct 245691 CTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGC 245632 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 77285 || || |||| || | || || || | || ||| | ||| || || || || Sbjct 245631 ATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGC 245572 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345 ||||| ||||| || || | || ||||| | ||||| || || || || ||| Sbjct 245571 TTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTA 245512 Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAA 77402 || | || || | ||||| || || || || |||| | || ||||| || Sbjct 245511 CTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCTG---CGGCGAGTTCGCAG 245455 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 77462 || || |||| || ||| || || || ||||| |||| | ||||| || ||| Sbjct 245454 CTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCT 245395 Query 77463 TCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCA 77522 || || || ||||||| | | || || |||||||| || | ||||| || || Sbjct 245394 TCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCG 245335 Query 77523 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTA 77582 || || || || || || | ||| ||||| | | ||||| || | || || || || Sbjct 245334 ATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAGTTG 245275 Query 77583 ATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGA 77642 ||||| || || || ||||| ||| | || | ||| || ||| || || Sbjct 245274 ATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTG 245215 Query 77643 AAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAA 77699 || || || | | ||| | || ||||||| | || || || || || || || Sbjct 245214 AAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAG 245155 Query 77700 ACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTG 77759 || || ||||| | | ||| || | | | ||| || || || || || |||||| Sbjct 245154 ACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTG 245095 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 || |||||||| || || ||||||||||| | ||||| | |||||| || || || | Sbjct 245094 ATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAG 245035 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTAT 77878 || ||||||||||| |||| || ||||| || | | ||||| | || || || | Sbjct 245034 GGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA-GCTGCTGCGCCTTCAC 244976 Query 77879 CATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCC 77938 || || | || || | |||||| || || ||| || || || ||||| Sbjct 244975 CACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCC 244916 Query 77939 CCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTC 77998 ||| || |||| || || || || | || |||||||| |||||||| | Sbjct 244915 CCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCT 244856 Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 || |||| ||||| || || || || ||||| | || || || |||| || ||| Sbjct 244855 CTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCT 244796 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 || || || |||||||| ||||| || || || || || || | | || | ||||| Sbjct 244795 CTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCA 244736 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCT 78178 ||||| || || || || | | || |||| || || || ||||| || | || | Sbjct 244735 CGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCG 244676 Query 78179 GGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 || ||||| || |||||||||| ||| || | | ||||| || | || || || || Sbjct 244675 AGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCC 244616 Query 78239 AGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCAT 78298 || || || ||||| | | || || || | | | || || || || || Sbjct 244615 AGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGA 244556 Query 78299 CTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCAT 78358 ||| || || || ||||| | |||| || |||||||| || || || ||||| ||| | Sbjct 244555 CTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTT 244496 Query 78359 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGT 78418 |||| | || || || ||||| |||| || | | || || || || || | || Sbjct 244495 CATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGT 244436 Query 78419 CGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTC 78478 |||||| || || || ||||| || || || || || ||||| || || || || | || Sbjct 244435 CGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTC 244376 Query 78479 TATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAAC 78538 ||||| | || || || |||| || | ||| | ||| ||||| || | || | Sbjct 244375 GATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGC 244316 Query 78539 CGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 78598 | || || || |||| || ||| || |||| ||| || ||||| || |||| Sbjct 244315 CACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAAGAAGTT 244256 Query 78599 GTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAAC 78658 ||| || || ||||| || ||||| || ||||| || || |||| || | || Sbjct 244255 GTAGGAGAAATCTCTGTCATAAATGATGGAGGAATTAAGGCGGTCCTTGTTTTCCATGAC 244196 Query 78659 AATATCCATGACAGTAGTTGAA-ATAATAGGAGATCGTACACCATTTTT---AGGATTAA 78714 || || | | | ||| | || || ||||| || | | || || ||| || | Sbjct 244195 GATGTCGA-GCGTCTCCTTGGAGATCATGGGAGA--GTGC-CGTTTGTTCAGAGGGTTGA 244140 Query 78715 CATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGAT 78774 | ||| || | |||||||| || || || || | || || || |||||||| || | Sbjct 244139 CGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGT 244080 Query 78775 TAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGG 78834 | || || || || || || || || || || || || || |||| || || |||| Sbjct 244079 TGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGG 244020 Query 78835 CTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTT 78894 | || || || ||||||| | |||| ||| | || ||||| || | || | || | Sbjct 244019 CCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCT 243960 Query 78895 GAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATA 78954 | || || ||||||| ||| | | ||||| ||||| || | ||||| || || || | Sbjct 243959 GGATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-A 243901 Query 78955 ATTTTCTA-ATACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 | |||| || || || ||||||||||| || || || ||||| || |||| Sbjct 243900 AGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGCCCAT 243846 >seq577 Length=410616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || || || || | || ||||| || || || ||||| || || ||||| || ||| Sbjct 153456 GTGCCGGCGTTGAACAGGGTAGGAGACGCGTGAGTGAACCACTTCTCTGAAAGCAGGTTG 153515 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||| ||||| || ||||| || ||||| || || || || | ||||| | Sbjct 153516 TATGTTTCAACAGCTGCATCAATGTCTTCTTTGTGAATCCCGACTGCCACTCTCATCAGC 153575 Query 78519 ATATGCTGAGGTCTTTCA 78536 || ||||| ||||| ||| Sbjct 153576 ATGTGCTGGGGTCTCTCA 153593 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || | ||||| |||||||||||||| |||||| |||| | Sbjct 151954 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 152013 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| | |||||| || || || |||| || || || || |||| || ||||| || Sbjct 152014 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATGATG 152073 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 152074 GCGTACCAGA 152083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694512603720320