Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2100 136 9e-27 seq722 100 7e-16 >seq2100 Length=111253 Score = 136 bits (150), Expect = 9e-27 Identities = 170/230 (74%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || || ||||| ||||||||||| |||| | || Sbjct 27583 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 27642 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 27643 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 27700 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 || ||||| || || || || || ||| |||| | | |||| ||| ||| || Sbjct 27701 CCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTC---ACTGGGCTCCACC 27757 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| ||||| || ||||| |||| |||||| || Sbjct 27758 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 27807 Score = 134 bits (148), Expect = 3e-26 Identities = 168/227 (74%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || ||||| ||||||||||||||||| || | | || Sbjct 27355 CCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGGGT 27414 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 27415 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 27472 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 || ||||| || || || || ||||| |||| | | |||| ||| ||| || Sbjct 27473 CCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACC 27529 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| ||||| ||||| ||||||| |||||| Sbjct 27530 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 27576 Score = 123 bits (136), Expect = 6e-23 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || ||||| || ||||| || ||||||||||| || | | || Sbjct 23393 CCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 23452 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| ||||||||||| || | | ||| Sbjct 23453 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGATCAGGGGGGATG 23510 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || || || ||||| |||| | | |||| ||| || || Sbjct 23511 CCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCC 23570 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 23571 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 23614 Score = 120 bits (132), Expect = 7e-22 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || || || ||||||||||| ||||| || | | || Sbjct 23621 CCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 23680 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| || || ||||| |||||||||||||| | | ||| Sbjct 23681 GCGGCCATCTTCCAGCTGCTTT--CCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 23738 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || ||||| ||||| |||| | | |||| ||| || || Sbjct 23739 CCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCC 23798 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||| ||||| ||||| || |||| |||||| || Sbjct 23799 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 23845 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || ||||| ||||| ||||||||||| || | | || Sbjct 23165 CCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGGGT 23224 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || || || ||||| |||||||||||||| | | ||| || Sbjct 23225 GCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 23284 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || ||||| ||||| |||| | | |||| || || || || Sbjct 23285 CTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAG 23344 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| ||||| ||||| ||||||| |||||| Sbjct 23345 GGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 23386 >seq722 Length=280156 Score = 100 bits (110), Expect = 7e-16 Identities = 164/234 (70%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || ||||| ||||| || | | || Sbjct 192175 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGT 192116 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | || || Sbjct 192115 GCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCC 192056 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| || || |||| | | | || ||| ||| || || Sbjct 192055 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTC 191999 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACCCT 152112 || || || || || || ||||| || |||||||| | |||||| ||||| || Sbjct 191998 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTTACACT 191945 Score = 96.9 bits (106), Expect = 8e-15 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || |||||||| || || | | || Sbjct 192403 CCTCAGGCAGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGACAGGGT 192344 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | || | Sbjct 192343 GCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTC 192284 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| || || |||| | | | || ||| ||| || || Sbjct 192283 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTC 192227 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || ||||| || |||||||| | |||||| Sbjct 192226 CAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 192182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153554877477948