Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2088 178 2e-39 seq646 123 4e-23 seq1522 107 3e-18 >seq2088 Length=212312 Score = 178 bits (196), Expect = 2e-39 Identities = 207/278 (74%), Gaps = 1/278 (0%) Strand=Plus/Minus Query 8310 CCTTGA-CGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||| ||||| | || || || ||| | | ||| | |||||||| | || || Sbjct 147493 CCTTGAACGTTGTTGCAAACCAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 147434 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || || ||||||||||||||||||||| | || ||||| ||| ||| |||| Sbjct 147433 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAGCAAATGGGATTCCCCATC 147374 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 ||||||||||||||||| |||||||||| ||| | || |||| || || |||||||| Sbjct 147373 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 147314 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 || |||||||| ||||| | | |||| ||| ||||||||||| |||||||| ||||| Sbjct 147313 GGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGCTCCACAGCGTCGACGTCACCGTAC 147254 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || | ||| ||| || || || || |||||||| Sbjct 147253 AGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 147216 Score = 129 bits (142), Expect = 8e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||| ||||| || ||| |||||| ||| ||||| || Sbjct 145899 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 145840 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| ||| || ||||||| |||||| || | ||||||||| |||||||||||| Sbjct 145839 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 145780 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || ||||| || || ||||| || || ||||| Sbjct 145779 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 145739 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 9905 AAGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 9964 || |||||| ||| || | ||| ||||| || || ||||| ||||| || | Sbjct 144939 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGA 144880 Query 9965 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAT 10024 | ||| ||||| || ||||| | |||||||||||| |||| | |||||||||||||| Sbjct 144879 GTGTAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAA 144820 Query 10025 ATGGGAGGGCTGTCAATCAAATCGGATC 10052 | ||||| |||||||||| || ||||| Sbjct 144819 GTAGGAGGACTGTCAATCATATGGGATC 144792 >seq646 Length=297705 Score = 123 bits (136), Expect = 4e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| ||| |||||| || || | ||| | | |||| ||| | Sbjct 224458 GGACACCACTTGGTGTTCAGACAGACCAGTTTCTTCAGAGTCGATGTTTTGATGATGTTG 224517 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| || || |||||||||||||||||||||||| | || ||| |||| ||| Sbjct 224518 AAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATTC 224577 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | |||||||| |||||||| || || |||| ||| | |||||||| ||||| ||| Sbjct 224578 CCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATATG 224637 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | |||||| || | || |||| || || || | || | ||||| || || | ||| Sbjct 224638 GAGTTGGGGCGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCCAGGGCGTCAATGTCA 224697 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 224698 CCGTAGAG 224705 Score = 118 bits (130), Expect = 2e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||||||||||| ||||||||||| || ||||||||| ||| |||||||| Sbjct 231202 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCG 231261 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| | || ||||||| |||||| ||||| |||||||| ||||||||||| || Sbjct 231262 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 231321 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9399 || || || || || || || | || || |||| || || ||| Sbjct 231322 AGGCCTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGC 231366 >seq1522 Length=231901 Score = 107 bits (118), Expect = 3e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| |||| || || | || ||||| ||||||||||||||||| | |||||| Sbjct 122328 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 122269 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || ||| ||| ||| ||||||||||||||| || || || |||| || | ||||| Sbjct 122268 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCGCCCATTTCCACCATGCTT 122209 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||| || || || || | ||| |||| || || |||| ||| | || | | Sbjct 122208 TCTCCGAATATCGCCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 122149 Query 8531 GCCTCGA 8537 || |||| Sbjct 122148 GCGTCGA 122142 Score = 84.2 bits (92), Expect = 3e-11 Identities = 172/256 (67%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||| || || || || ||||| || ||||| || ||| ||||| Sbjct 118876 TCACCGATGACGATAAGGCGGGTCGTTTGGAAGAGCTGCTCATCGTCCCAGGTCGGATGC 118817 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||||| || || || || |||||||| ||||||||||| | |||||||||| Sbjct 118816 TCTGCTTTCAGGACGTCACAGACTCTGTTGTGCTCCCTGAGCCACAGTGTGGCGTACAAA 118757 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||||| | || || || |||| ||||| | |||| | | | | ||| Sbjct 118756 CCCAAACCAGGAAGGAGCCCGAACACCTCCTGACCAATGGCCATCTGTCTCTCCGCCGGC 118697 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || ||||||| ||| |||| | | |||| || || || || |||||||| Sbjct 118696 ACCCCGGGAGGGTAGCTCATCCTGATGGGAGCGTCAACTACAGATGGAGGGTACATTTCT 118637 Query 9472 CCGTCAATCATCTGAT 9487 || || | || ||||| Sbjct 118636 CCATCGACCAACTGAT 118621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716715610251520